Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002140A_C01 KMC002140A_c01
(421 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC80988.1| protein kinase 2 [Beta vulgaris] 98 3e-20
gb|AAK63938.1|AC084282_19 casein kinase II alpha subunit, 5'-par... 95 2e-19
dbj|BAB21589.1| casein kinase II alpha subunit [Oryza sativa (in... 95 2e-19
gb|AAK54616.1|AF374474_1 CK2 alpha subunit [Nicotiana tabacum] 95 2e-19
gb|AAN41288.1| Casein kinase II, alpha chain 2 (CK II) [Arabidop... 94 5e-19
>emb|CAC80988.1| protein kinase 2 [Beta vulgaris]
Length = 333
Score = 97.8 bits (242), Expect = 3e-20
Identities = 48/56 (85%), Positives = 50/56 (88%)
Frame = -1
Query: 421 KFINPDNQHLVFLEAIDFLDKLLRYDPQDRLPAKEAMAHPYFFQVRAAESSRMRPQ 254
+F+NPDNQHLV EAIDFLDKLLRYD QDRL AKEAMAHPYF QVRAAESSRMR Q
Sbjct: 278 RFVNPDNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRTQ 333
>gb|AAK63938.1|AC084282_19 casein kinase II alpha subunit, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 150
Score = 95.1 bits (235), Expect = 2e-19
Identities = 46/56 (82%), Positives = 49/56 (87%)
Frame = -1
Query: 421 KFINPDNQHLVFLEAIDFLDKLLRYDPQDRLPAKEAMAHPYFFQVRAAESSRMRPQ 254
KFIN DNQHLV EA+DFLDKLLRYD QDRL A+EAMAHPYF QVRAAE+SR RPQ
Sbjct: 95 KFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ 150
>dbj|BAB21589.1| casein kinase II alpha subunit [Oryza sativa (indica
cultivar-group)] gi|12697581|dbj|BAB21591.1| casein
kinase II alpha subunit [Oryza sativa (indica
cultivar-group)]
Length = 333
Score = 95.1 bits (235), Expect = 2e-19
Identities = 46/56 (82%), Positives = 49/56 (87%)
Frame = -1
Query: 421 KFINPDNQHLVFLEAIDFLDKLLRYDPQDRLPAKEAMAHPYFFQVRAAESSRMRPQ 254
KFIN DNQHLV EA+DFLDKLLRYD QDRL A+EAMAHPYF QVRAAE+SR RPQ
Sbjct: 278 KFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ 333
>gb|AAK54616.1|AF374474_1 CK2 alpha subunit [Nicotiana tabacum]
Length = 333
Score = 94.7 bits (234), Expect = 2e-19
Identities = 47/56 (83%), Positives = 49/56 (86%)
Frame = -1
Query: 421 KFINPDNQHLVFLEAIDFLDKLLRYDPQDRLPAKEAMAHPYFFQVRAAESSRMRPQ 254
KFIN DNQHLV EAIDFLDKLLRYD QDRL A+EAMAHPYF QVRAAE+SRMR Q
Sbjct: 278 KFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRMRTQ 333
>gb|AAN41288.1| Casein kinase II, alpha chain 2 (CK II) [Arabidopsis thaliana]
Length = 403
Score = 93.6 bits (231), Expect = 5e-19
Identities = 47/56 (83%), Positives = 49/56 (86%)
Frame = -1
Query: 421 KFINPDNQHLVFLEAIDFLDKLLRYDPQDRLPAKEAMAHPYFFQVRAAESSRMRPQ 254
KFIN DN+HLV EAID+LDKLLRYD QDRL AKEAMAHPYF QVRAAESSRMR Q
Sbjct: 348 KFINADNRHLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQVRAAESSRMRTQ 403
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,581,166
Number of Sequences: 1393205
Number of extensions: 7971686
Number of successful extensions: 20596
Number of sequences better than 10.0: 1185
Number of HSP's better than 10.0 without gapping: 20053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20586
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
