Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002136A_C01 KMC002136A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199674.1| cyclin C-like protein; protein id: At5g48630.1,... 104 8e-22
ref|NP_199675.1| cyclin C-like protein; protein id: At5g48640.1 ... 98 6e-20
sp|P93411|CG1C_ORYSA G1/S-SPECIFIC CYCLIN C-TYPE gi|7489457|pir|... 88 6e-17
sp|P39947|CG1C_RAT Cyclin C gi|413907|dbj|BAA03114.1| cyclin C [... 55 4e-07
dbj|BAC29908.1| unnamed protein product [Mus musculus] 55 4e-07
>ref|NP_199674.1| cyclin C-like protein; protein id: At5g48630.1, supported by cDNA:
2036. [Arabidopsis thaliana] gi|10177353|dbj|BAB10696.1|
cyclin C-like protein [Arabidopsis thaliana]
gi|21554107|gb|AAM63187.1| cyclin C-like protein
[Arabidopsis thaliana]
Length = 253
Score = 104 bits (259), Expect = 8e-22
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = -1
Query: 553 VHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRMFTDERMH 374
+HPP LI LACIYIAS +EKD WFEEL VDMN+VKNI+MEILDFYE++R+FT+ER+H
Sbjct: 184 IHPPFLITLACIYIASVHKEKDIKTWFEELSVDMNIVKNIAMEILDFYENHRLFTEERVH 243
Query: 373 AALQKL 356
AA KL
Sbjct: 244 AAFNKL 249
>ref|NP_199675.1| cyclin C-like protein; protein id: At5g48640.1 [Arabidopsis
thaliana] gi|10177354|dbj|BAB10697.1| cyclin C-like
protein [Arabidopsis thaliana]
Length = 259
Score = 98.2 bits (243), Expect = 6e-20
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = -1
Query: 553 VHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRMFTDERMH 374
VHPP+ IALACIYIAS REKD T WFE+LH DMN+VKNI+MEILDFYE+ R T+E+++
Sbjct: 190 VHPPYRIALACIYIASVHREKDITAWFEDLHEDMNLVKNIAMEILDFYENYRTITEEKVN 249
Query: 373 AALQKL 356
+A KL
Sbjct: 250 SAFSKL 255
>sp|P93411|CG1C_ORYSA G1/S-SPECIFIC CYCLIN C-TYPE gi|7489457|pir||T03724 C-type cyclin -
rice gi|1695698|dbj|BAA13181.1| C-type cyclin [Oryza
sativa (japonica cultivar-group)]
Length = 257
Score = 88.2 bits (217), Expect = 6e-17
Identities = 37/53 (69%), Positives = 49/53 (91%)
Frame = -1
Query: 553 VHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRM 395
+HPP++IALACIYIAS +++KD T+WFEEL VDMN+VKNISMEILDFY++ ++
Sbjct: 183 IHPPYMIALACIYIASVLKDKDITLWFEELRVDMNIVKNISMEILDFYDTYKI 235
>sp|P39947|CG1C_RAT Cyclin C gi|413907|dbj|BAA03114.1| cyclin C [Rattus rattus]
Length = 298
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = -1
Query: 553 VHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRMFTDERMH 374
++PP +IALAC+++A V++KD WF EL VDM + I IL YE + F DER
Sbjct: 206 LYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNF-DERKE 264
Query: 373 AA 368
A
Sbjct: 265 MA 266
>dbj|BAC29908.1| unnamed protein product [Mus musculus]
Length = 282
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = -1
Query: 553 VHPPHLIALACIYIASAVREKDTTVWFEELHVDMNVVKNISMEILDFYESNRMFTDERMH 374
++PP +IALAC+++A V++KD WF EL VDM + I IL YE + F DER
Sbjct: 191 LYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNF-DERKE 249
Query: 373 AA 368
A
Sbjct: 250 MA 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,831,384
Number of Sequences: 1393205
Number of extensions: 8376742
Number of successful extensions: 13847
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13845
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
