Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002134A_C01 KMC002134A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B96747 probable alanine aminotransferase T10D10.20 [importe... 234 2e-61
gb|AAK59591.2| putative alanine aminotransferase [Arabidopsis th... 234 2e-61
ref|NP_565040.1| putative alanine aminotransferase; protein id: ... 234 2e-61
dbj|BAC16025.1| alanine aminotransferase [Oryza sativa (japonica... 229 2e-61
gb|AAF82782.1|AF275372_1 alanine aminotransferase [Arabidopsis t... 226 5e-59
>pir||B96747 probable alanine aminotransferase T10D10.20 [imported] -
Arabidopsis thaliana gi|9082268|gb|AAF82781.1|AF275371_1
alanine aminotransferase [Arabidopsis thaliana]
gi|12325273|gb|AAG52580.1|AC016529_11 putative alanine
aminotransferase; 79592-76658 [Arabidopsis thaliana]
Length = 540
Score = 234 bits (598), Expect(2) = 2e-61
Identities = 112/134 (83%), Positives = 125/134 (92%)
Frame = -3
Query: 701 NISGQILASLIMSPPKVGDESYESFMAEKENILSSLARRAKILEDGFNKLEGVTCNKAEG 522
NISGQILASL+MSPPK GD+SY+S+MAE++ ILSS+A+RAK LED N LEGVTCN+AEG
Sbjct: 394 NISGQILASLVMSPPKPGDDSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEG 453
Query: 521 AMYLFPQIRLPQKAIKAAEAANTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 342
AMYLFP+I LPQKAI+AAEA TAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI
Sbjct: 454 AMYLFPRINLPQKAIEAAEAEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 513
Query: 341 LPQEEKIPAIVSRL 300
LPQE+KIPAIV+RL
Sbjct: 514 LPQEDKIPAIVNRL 527
Score = 23.5 bits (49), Expect(2) = 2e-61
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 294 EFHEKFMNEFRD 259
EFH+ FM+EFR+
Sbjct: 529 EFHKSFMDEFRN 540
>gb|AAK59591.2| putative alanine aminotransferase [Arabidopsis thaliana]
Length = 532
Score = 234 bits (598), Expect(2) = 2e-61
Identities = 112/134 (83%), Positives = 125/134 (92%)
Frame = -3
Query: 701 NISGQILASLIMSPPKVGDESYESFMAEKENILSSLARRAKILEDGFNKLEGVTCNKAEG 522
NISGQILASL+MSPPK GD+SY+S+MAE++ ILSS+A+RAK LED N LEGVTCN+AEG
Sbjct: 386 NISGQILASLVMSPPKPGDDSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEG 445
Query: 521 AMYLFPQIRLPQKAIKAAEAANTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 342
AMYLFP+I LPQKAI+AAEA TAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI
Sbjct: 446 AMYLFPRINLPQKAIEAAEAEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 505
Query: 341 LPQEEKIPAIVSRL 300
LPQE+KIPAIV+RL
Sbjct: 506 LPQEDKIPAIVNRL 519
Score = 23.5 bits (49), Expect(2) = 2e-61
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 294 EFHEKFMNEFRD 259
EFH+ FM+EFR+
Sbjct: 521 EFHKSFMDEFRN 532
>ref|NP_565040.1| putative alanine aminotransferase; protein id: At1g72330.1,
supported by cDNA: gi_14334825 [Arabidopsis thaliana]
Length = 489
Score = 234 bits (598), Expect(2) = 2e-61
Identities = 112/134 (83%), Positives = 125/134 (92%)
Frame = -3
Query: 701 NISGQILASLIMSPPKVGDESYESFMAEKENILSSLARRAKILEDGFNKLEGVTCNKAEG 522
NISGQILASL+MSPPK GD+SY+S+MAE++ ILSS+A+RAK LED N LEGVTCN+AEG
Sbjct: 343 NISGQILASLVMSPPKPGDDSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEG 402
Query: 521 AMYLFPQIRLPQKAIKAAEAANTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 342
AMYLFP+I LPQKAI+AAEA TAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI
Sbjct: 403 AMYLFPRINLPQKAIEAAEAEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 462
Query: 341 LPQEEKIPAIVSRL 300
LPQE+KIPAIV+RL
Sbjct: 463 LPQEDKIPAIVNRL 476
Score = 23.5 bits (49), Expect(2) = 2e-61
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 294 EFHEKFMNEFRD 259
EFH+ FM+EFR+
Sbjct: 478 EFHKSFMDEFRN 489
>dbj|BAC16025.1| alanine aminotransferase [Oryza sativa (japonica cultivar-group)]
gi|24060045|dbj|BAC21502.1| alanine aminotransferase
[Oryza sativa (japonica cultivar-group)]
Length = 485
Score = 229 bits (584), Expect(2) = 2e-61
Identities = 109/133 (81%), Positives = 122/133 (90%)
Frame = -3
Query: 701 NISGQILASLIMSPPKVGDESYESFMAEKENILSSLARRAKILEDGFNKLEGVTCNKAEG 522
N+SGQILASLIM+PPK GDESYESFM EK+ ILSSLARRAK LE+ FN LEG+TCNKAEG
Sbjct: 339 NVSGQILASLIMNPPKAGDESYESFMVEKDGILSSLARRAKALEEAFNSLEGITCNKAEG 398
Query: 521 AMYLFPQIRLPQKAIKAAEAANTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 342
AMYLFP+I LPQKAI AA+AA TAPDA+Y +RLL ATG+VVVPGSGFGQVPGTWHFRCTI
Sbjct: 399 AMYLFPRIYLPQKAIGAAQAAGTAPDAYYARRLLEATGIVVVPGSGFGQVPGTWHFRCTI 458
Query: 341 LPQEEKIPAIVSR 303
LPQE+KIPAI+S+
Sbjct: 459 LPQEDKIPAIISK 471
Score = 28.9 bits (63), Expect(2) = 2e-61
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = -2
Query: 294 EFHEKFMNEFRD 259
EFHEKFM+EFRD
Sbjct: 474 EFHEKFMDEFRD 485
>gb|AAF82782.1|AF275372_1 alanine aminotransferase [Arabidopsis thaliana]
Length = 543
Score = 226 bits (577), Expect(2) = 5e-59
Identities = 111/134 (82%), Positives = 120/134 (88%)
Frame = -3
Query: 701 NISGQILASLIMSPPKVGDESYESFMAEKENILSSLARRAKILEDGFNKLEGVTCNKAEG 522
NISGQILASLIMSPPK GD+SYES++AEK+ ILSSLARRAK LE+ NKLEGVTCN+AEG
Sbjct: 397 NISGQILASLIMSPPKPGDDSYESYIAEKDGILSSLARRAKTLEEALNKLEGVTCNRAEG 456
Query: 521 AMYLFPQIRLPQKAIKAAEAANTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTI 342
AMYLFP + LPQKAI AAEA TAPD FYCKRLL ATG+VVVPGSGF QVPGTWHFRCTI
Sbjct: 457 AMYLFPCLHLPQKAIAAAEAEKTAPDNFYCKRLLKATGIVVVPGSGFRQVPGTWHFRCTI 516
Query: 341 LPQEEKIPAIVSRL 300
LPQE+KIPAIV RL
Sbjct: 517 LPQEDKIPAIVDRL 530
Score = 23.9 bits (50), Expect(2) = 5e-59
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 291 FHEKFMNEFRD 259
FH+ FM+EFRD
Sbjct: 533 FHQSFMDEFRD 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,050,000
Number of Sequences: 1393205
Number of extensions: 13144335
Number of successful extensions: 33176
Number of sequences better than 10.0: 254
Number of HSP's better than 10.0 without gapping: 31847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33051
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
