Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002130A_C02 KMC002130A_c02
(1033 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca] 190 4e-47
sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein... 188 1e-46
pir||S46959 porin I, 36K - potato gi|1076680|pir||C55364 porin (... 188 1e-46
pir||T09116 voltage-dependent anion channel protein - spinach gi... 186 4e-46
pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| p... 186 5e-46
>gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
Length = 276
Score = 190 bits (482), Expect = 4e-47
Identities = 91/112 (81%), Positives = 103/112 (91%)
Frame = -3
Query: 1031 TKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPL 852
T DLIA+L LNDK D + ASYYH VSPLTNTAVGAE++H FS+NEN+LT+GTQHALDPL
Sbjct: 165 THTDLIASLILNDKADTVTASYYHTVSPLTNTAVGAELSHSFSSNENSLTIGTQHALDPL 224
Query: 851 TTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 696
TT+K RVNN+G+ASALIQHEWRPKSFFTISGEVDT+AIEKSAK+GLALALKP
Sbjct: 225 TTVKGRVNNYGRASALIQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276
>sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein porin (Voltage-dependent
anion-selective channel protein) (VDAC) (POM 36)
gi|515360|emb|CAA56600.1| 36kDA porin II [Solanum
tuberosum]
Length = 276
Score = 188 bits (477), Expect = 1e-46
Identities = 89/112 (79%), Positives = 103/112 (91%)
Frame = -3
Query: 1031 TKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPL 852
+ DLIA+L LNDKGD ++ASYYH V P+TNTAVGAE+TH FS+NENTLT+GTQH LDPL
Sbjct: 165 SSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPL 224
Query: 851 TTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 696
TT+KARVN++GKASALIQHEWRPKS FTISGEVDT+AIEKSAK+GLA+ALKP
Sbjct: 225 TTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
>pir||S46959 porin I, 36K - potato gi|1076680|pir||C55364 porin (clone pPOM 36.1)
- potato mitochondrion gi|515358|emb|CAA56601.1| 36kDa
porin I [Solanum tuberosum]
Length = 276
Score = 188 bits (477), Expect = 1e-46
Identities = 89/112 (79%), Positives = 103/112 (91%)
Frame = -3
Query: 1031 TKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPL 852
+ DLIA+L LNDKGD ++ASYYH V P+TNTAVGAE+TH FS+NENTLT+GTQH LDPL
Sbjct: 165 SSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPL 224
Query: 851 TTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 696
TT+KARVN++GKASALIQHEWRPKS FTISGEVDT+AIEKSAK+GLA+ALKP
Sbjct: 225 TTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
>pir||T09116 voltage-dependent anion channel protein - spinach
gi|1256259|gb|AAA96275.1| voltage-dependent anion channel
protein
Length = 276
Score = 186 bits (473), Expect = 4e-46
Identities = 90/112 (80%), Positives = 102/112 (90%)
Frame = -3
Query: 1031 TKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPL 852
T DDLIA++ +NDK D LNASYYH+VSPLTNTAVGAE++H FS+NENTL +GTQHALDPL
Sbjct: 165 TNDDLIASVNVNDKLDILNASYYHIVSPLTNTAVGAELSHSFSSNENTLNIGTQHALDPL 224
Query: 851 TTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 696
T++KARVNN+GKASALIQHEWRPKS TISGEVDT AIEKSAK+GLAL LKP
Sbjct: 225 TSVKARVNNYGKASALIQHEWRPKSIVTISGEVDTSAIEKSAKLGLALVLKP 276
>pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| porin
[Mesembryanthemum crystallinum]
Length = 276
Score = 186 bits (472), Expect = 5e-46
Identities = 90/109 (82%), Positives = 98/109 (89%)
Frame = -3
Query: 1022 DLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTL 843
DLIA+LTLNDKGD LNASYYH +SPLT++AVGAEV H FSTN+NT+TLG QHA+DPLT L
Sbjct: 168 DLIASLTLNDKGDTLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLTNL 227
Query: 842 KARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 696
K RVNNFGKA+ALIQHEWRPKS T S EVDTKAIEKSAKVGLALALKP
Sbjct: 228 KGRVNNFGKATALIQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 850,600,353
Number of Sequences: 1393205
Number of extensions: 18851557
Number of successful extensions: 42118
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 40433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42095
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 60429070113
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
