Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002125A_C01 KMC002125A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_014465.1| Daughter Specific Expression 4; Dse4p [Saccharo... 32 4.9
ref|NP_704130.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.9
ref|NP_702331.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.4
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplast ... 31 8.4
ref|NP_700625.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.4
>ref|NP_014465.1| Daughter Specific Expression 4; Dse4p [Saccharomyces cerevisiae]
gi|1730696|sp|P53753|YN96_YEAST HYPOTHETICAL 121.1 KD
PROTEIN IN BIO3-HXT17 INTERGENIC REGION PRECURSOR
gi|2132814|pir||S63399 probable membrane protein YNR067c
- yeast (Saccharomyces cerevisiae)
gi|1302598|emb|CAA96349.1| ORF YNR067c [Saccharomyces
cerevisiae]
Length = 1117
Score = 32.0 bits (71), Expect = 4.9
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +3
Query: 138 LYPSSTNMIQNGRKRPPNLI-TNNNYYINNQP*LLYFSSLFLHLTNRSQKLHLTKTG*FI 314
+YPS N+ +NG P+L T + Y ++ + SSLF + + S + T ++
Sbjct: 299 IYPS--NITENGSSPSPSLSSTVSPVYPSSSTGNILLSSLFSTVDSSSSPVSSTLDTIYV 356
Query: 315 ATKLAQTHSSSSSSYINSEKIS*IAKISYHNPNT--NSFTTKGIESCFEVSSMELVSPFL 488
++ + T SSSSSS S ++ + T NS TT + VS+ E + F
Sbjct: 357 SSSMQATISSSSSSRQTKTSSSSLSTSTSSTATTTENSSTTTIVNLFNAVSTDEPPTVFD 416
Query: 489 RQAN 500
R N
Sbjct: 417 RSPN 420
>ref|NP_704130.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498868|emb|CAD50946.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3401
Score = 32.0 bits (71), Expect = 4.9
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +3
Query: 165 QNGRKRPPNLITNNNYYINNQP*LLYFSSLFLHLTNRSQKLHLTKTG*FIATK--LAQTH 338
QNG K ++ T + Y F+ LH + S++L L+ + +++K L T
Sbjct: 2490 QNGNKETDSMTTKKSLYKKQH----VFNRFLLHKRSSSKRLSLSFSSSVLSSKSTLTFTG 2545
Query: 339 SSSSSSYINSEKIS*IAKISYHNPNTNSFTTKGIESCFE-VSSMELVSP 482
SSSSSS ++ S + S + +T+S ++ S VS +E + P
Sbjct: 2546 SSSSSSSSSTSSSSSSSTSSSSSSSTSSSSSSSTSSPSPGVSPLENIHP 2594
>ref|NP_702331.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497513|gb|AAN37055.1|AE014823_35 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3001
Score = 31.6 bits (70), Expect = 6.4
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Frame = +3
Query: 153 TNMIQNGRKRPPNLITNNNY-YINNQP*LLY----FSSLFLHLTNRS 278
++MI N +P N+IT+NNY Y NN + Y FS FL++ N+S
Sbjct: 2758 SSMINN---KPYNIITSNNYNYNNNNDNIHYEERHFSCYFLYMVNKS 2801
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplast precursor
(Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
gi|7437282|pir||S68407 ribulose-phosphate 3-epimerase
(EC 5.1.3.1) precursor - potato (fragment)
gi|902739|emb|CAA90426.1|
pentose-5-phosphate-3-epimerase [Solanum tuberosum]
Length = 280
Score = 31.2 bits (69), Expect = 8.4
Identities = 21/62 (33%), Positives = 32/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 342 SSSSSYINSEKIS*IAKISYHNPNTNSFTTKGIESCFEVSSME--------LVSPFLRQA 497
S S + S+K+ KIS+ NPN+ +FT + I++ SS +VSP + A
Sbjct: 10 SQISGFGGSQKLQ---KISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSA 66
Query: 498 NF 503
NF
Sbjct: 67 NF 68
>ref|NP_700625.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495016|gb|AAN35349.1|AE014831_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 773
Score = 31.2 bits (69), Expect = 8.4
Identities = 27/100 (27%), Positives = 41/100 (41%)
Frame = +3
Query: 141 YPSSTNMIQNGRKRPPNLITNNNYYINNQP*LLYFSSLFLHLTNRSQKLHLTKTG*FIAT 320
Y ++ N N N T NNY NN+ Y+ ++ N H +K +I +
Sbjct: 358 YNNNNNNNNNSINNSNNEYTGNNYNNNNKGNHYYYHNIH---NNHMHDTHNSKN--YIGS 412
Query: 321 KLAQTHSSSSSSYINSEKIS*IAKISYHNPNTNSFTTKGI 440
T +S + Y N K K Y +P N++ T GI
Sbjct: 413 NRYNTDKASYNYYNNHYK----NKQHYIDPQRNNYYTHGI 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,098,374
Number of Sequences: 1393205
Number of extensions: 7877142
Number of successful extensions: 16160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16137
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
