KMC002122A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002122A_C01 KMC002122A_c01
ccaCCATAATTTTAACTTAAGCGGGGTTTACAAACGAGATTCTAACATAAGGTATGCCTC
ATCATATGCAAGCATGAGATACCGATGCCATAATCAAAAGAAATAGCATATTAATTAATT
AATTAATTAATACATAGTAACACTTCAAAATCCATAACAGCAGCAGCATGCACTTATTAC
CACACCCTGCGGCTCAAATTTTAAGCACTAGCATTGCATTAAAAACAAGACTCTTTTACA
ACCCGCCAATTATACAGATGCGCATGACTACTCTTAACTATTATCCTCCCTACACCGCTG
AAAAGTATTCTTTGCTAAGTTTAGGGTCTGGTTTCATGGACTTCTCTCCTGGCTTCCATC
CAGCAGGGCAAACTTCATCTGGGTTCTCCTGCACATACTGCAAGGCCTGGAGTGTTCTCT
TCGTCTCATCAACACTTCTACCGATTGCCAAGTTGTTAATGGTGGAATGCTGAATCACCC
CTTCCTTGTCAATAATGAACAATCCTCTCAATGCAATTCCCTGATCAGGAATGAGAACAC
CGTAAGATTTTGATATGGATTTGGTGACATCAGAAACCAAAGGATAGTTCAAGTCACCAA
GGCCACCTGACTTTCTATCTGTTTGAACCCATGCAAGGTGCGAGAACACACTGTCAACTG
AAACACCCAATATCTCGGTATTTAGCGCCTCAAACTCTGCATGCCGGTCACTGAAAGCAG
TGATTTCTGTGGGACAGACCAATGTAAAGTCCAATGGCTAGAAAAAGAGTATCACATATT
TCTTCCCAATGTACTCAGACTATTTGACCTTGATAAATTCCTGATCGAAAACAGCCTCTG
CTTCAAAATCTGGTGCTGTATTTCCAACTAATGGAAGCTCACTGGTGGCTCTGACGAGGA
ATGAGCGGCGAGAGTGTGAGGGGCGAGTGAGGGAAACGCTGGGGAGGGAGAAGGGTTTGG
TGGAGAGAGGGTTGAGGGAGTTGGGGATGGAGAGAGAGGTGGTGGGTTTGGGAGAGAAGA
GGGGTGTAGGGTTTAGCTTCAGAGAGAAGAGAGAAGCTGCAGAACACGCCATTGACGGTG
TTGGAAACAGAGGATACAcactctct
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002122A_C01 KMC002122A_c01
(1106 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC48323.1| 2-Cys peroxiredoxin [Pisum sativum] 417 e-115
emb|CAC17803.1| peroxiredoxin [Phaseolus vulgaris] gi|11558244|e... 408 e-113
emb|CAC84143.2| thioredoxin peroxidase [Nicotiana tabacum] 393 e-108
gb|AAM62760.1| 2-cys peroxiredoxin-like protein [Arabidopsis tha... 382 e-105
ref|NP_568166.1| 2-cys peroxiredoxin-like protein; protein id: A... 381 e-105
>emb|CAC48323.1| 2-Cys peroxiredoxin [Pisum sativum]
Length = 263
Score = 417 bits (1073), Expect = e-115
Identities = 219/264 (82%), Positives = 232/264 (86%), Gaps = 4/264 (1%)
Frame = -2
Query: 1072 MACSAASLFSLKLNPTPLFSPKPTT----SLSIPNSLNPLSTKPFSLPSVSLTRPSHSRR 905
MACSA L NP LFSPK ++ SLSIPN+ N L SLP +SL R S SRR
Sbjct: 1 MACSAPFASLLYSNPNTLFSPKFSSPRLSSLSIPNAPNSLPKLRTSLP-LSLNRSSSSRR 59
Query: 904 SFLVRATSELPLVGNTAPDFEAEAVFDQEFIKVK*SEYIGKKYVILFF*PLDFTLVCPTE 725
+F+VRA+ ELPLVGN+APDFEAEAVFDQEFIKVK SEYIGKKYVILFF PLDFT VCPTE
Sbjct: 60 TFVVRASGELPLVGNSAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTE 119
Query: 724 ITAFSDRHAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKS 545
ITAFSDRHAEF+A+NTEILGVSVDSVFSHLAWVQ+DRKSGGLGDL YPLVSDVTKSIS+S
Sbjct: 120 ITAFSDRHAEFDAINTEILGVSVDSVFSHLAWVQSDRKSGGLGDLKYPLVSDVTKSISES 179
Query: 544 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCP 365
YGVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETKRTLQALQYVQENPDEVCP
Sbjct: 180 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCP 239
Query: 364 AGWKPGEKSMKPDPKLSKEYFSAV 293
AGWKPGEKSMKPDPK SKEYF+AV
Sbjct: 240 AGWKPGEKSMKPDPKGSKEYFAAV 263
>emb|CAC17803.1| peroxiredoxin [Phaseolus vulgaris] gi|11558244|emb|CAC17804.1|
peroxiredoxin [Phaseolus vulgaris]
Length = 260
Score = 408 bits (1049), Expect = e-113
Identities = 216/264 (81%), Positives = 225/264 (84%), Gaps = 4/264 (1%)
Frame = -2
Query: 1072 MACSAASLFSLKLNPTPLFSPK----PTTSLSIPNSLNPLSTKPFSLPSVSLTRPSHSRR 905
MA SA + NP LFSPK +SLS PNS N L F SL S R
Sbjct: 1 MASSAPCASLISSNPNILFSPKFPSSSFSSLSFPNSPNSL----FKPLRTSLNPSSPPLR 56
Query: 904 SFLVRATSELPLVGNTAPDFEAEAVFDQEFIKVK*SEYIGKKYVILFF*PLDFTLVCPTE 725
+F+ RA+SELPLVGNTAPDFEAEAVFDQEFIKVK S+YIGKKYVILFF PLDFT VCPTE
Sbjct: 57 TFVARASSELPLVGNTAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTE 116
Query: 724 ITAFSDRHAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKS 545
ITAFSDR+AEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPL+SDVTKSISKS
Sbjct: 117 ITAFSDRYAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKS 176
Query: 544 YGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCP 365
Y VLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCP
Sbjct: 177 YDVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCP 236
Query: 364 AGWKPGEKSMKPDPKLSKEYFSAV 293
AGWKPGEKSMKPDPKLSKEYFSA+
Sbjct: 237 AGWKPGEKSMKPDPKLSKEYFSAI 260
>emb|CAC84143.2| thioredoxin peroxidase [Nicotiana tabacum]
Length = 271
Score = 393 bits (1009), Expect = e-108
Identities = 210/271 (77%), Positives = 224/271 (82%), Gaps = 11/271 (4%)
Frame = -2
Query: 1072 MACSAASLFSLKLNPTPL-FSPKPTTS------LSIPNSLNPL-STKPFS---LPSVSLT 926
MACSA+S L NP SPK + LS+P+S N L + KPF S+S
Sbjct: 1 MACSASSTALLSSNPKAASISPKSSFQAPISQCLSVPSSFNGLRNCKPFVSRVARSLSTR 60
Query: 925 RPSHSRRSFLVRATSELPLVGNTAPDFEAEAVFDQEFIKVK*SEYIGKKYVILFF*PLDF 746
RR F+VRA+SELPLVGN APDFEAEAVFDQEFIKVK SEYIGKKYVILFF PLDF
Sbjct: 61 VAQSQRRRFVVRASSELPLVGNQAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDF 120
Query: 745 TLVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDV 566
T VCPTEITAFSDR+ EFE LNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPL+SDV
Sbjct: 121 TFVCPTEITAFSDRYGEFEKLNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDV 180
Query: 565 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQE 386
TKSISKSY VLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET RTLQALQYVQ+
Sbjct: 181 TKSISKSYNVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVQD 240
Query: 385 NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV 293
NPDEVCPAGWKPGEKSMKPDPK SKEYF+++
Sbjct: 241 NPDEVCPAGWKPGEKSMKPDPKGSKEYFASI 271
>gb|AAM62760.1| 2-cys peroxiredoxin-like protein [Arabidopsis thaliana]
Length = 271
Score = 382 bits (980), Expect = e-105
Identities = 206/271 (76%), Positives = 225/271 (83%), Gaps = 11/271 (4%)
Frame = -2
Query: 1072 MACSAASLFSLKLNPTPLFSPKPTTSLS----IPNSLNPLSTKPFSLPSV-----SLTRP 920
MA A+S + L+ + + P ++ LS +P +L+ S SL S SLT
Sbjct: 1 MASIASSSSTTLLSSSRVLLPSKSSLLSPTVSVPRTLHSSSASSSSLCSGFSSLGSLTTS 60
Query: 919 -SHSRRSFLVRATSE-LPLVGNTAPDFEAEAVFDQEFIKVK*SEYIGKKYVILFF*PLDF 746
S SRR+F V+A ++ LPLVGN APDFEAEAVFDQEFIKVK SEYIGKKYVILFF PLDF
Sbjct: 61 RSASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDF 120
Query: 745 TLVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDV 566
T VCPTEITAFSDR+ EFE LNTE+LGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSD+
Sbjct: 121 TFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDI 180
Query: 565 TKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQE 386
TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET RTLQALQYVQE
Sbjct: 181 TKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQE 240
Query: 385 NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV 293
NPDEVCPAGWKPGEKSMKPDPKLSKEYFSA+
Sbjct: 241 NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 271
>ref|NP_568166.1| 2-cys peroxiredoxin-like protein; protein id: At5g06290.1, supported
by cDNA: 15640., supported by cDNA: gi_11908047,
supported by cDNA: gi_12642865, supported by cDNA:
gi_13265489, supported by cDNA: gi_15451081, supported by
cDNA: gi_20148348 [Arabidopsis thaliana]
gi|11908048|gb|AAG41453.1|AF326871_1 putative 2-cys
peroxiredoxin protein [Arabidopsis thaliana]
gi|12642866|gb|AAK00375.1|AF339693_1 putative 2-cys
peroxiredoxin protein [Arabidopsis thaliana]
gi|15451082|gb|AAK96812.1| 2-cys peroxiredoxin-like
protein [Arabidopsis thaliana] gi|20148349|gb|AAM10065.1|
2-cys peroxiredoxin-like protein [Arabidopsis thaliana]
Length = 273
Score = 381 bits (979), Expect = e-105
Identities = 205/272 (75%), Positives = 223/272 (81%), Gaps = 11/272 (4%)
Frame = -2
Query: 1075 SMACSAASLFSLKLNPTPLFSPKPTTSLS--------IPNSLNPLST--KPFSLPSVSLT 926
SMA A+S + L+ + + P ++ LS IP+S S+ FS T
Sbjct: 2 SMASIASSSSTTLLSSSRVLLPSKSSLLSPTVSFPRIIPSSSASSSSLCSGFSSLGSLTT 61
Query: 925 RPSHSRRSFLVRATSE-LPLVGNTAPDFEAEAVFDQEFIKVK*SEYIGKKYVILFF*PLD 749
S SRR+F V+A ++ LPLVGN APDFEAEAVFDQEFIKVK SEYIGKKYVILFF PLD
Sbjct: 62 NRSASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLD 121
Query: 748 FTLVCPTEITAFSDRHAEFEALNTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSD 569
FT VCPTEITAFSDR+ EFE LNTE+LGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSD
Sbjct: 122 FTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSD 181
Query: 568 VTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETKRTLQALQYVQ 389
+TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET RTLQALQYVQ
Sbjct: 182 ITKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQ 241
Query: 388 ENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAV 293
ENPDEVCPAGWKPGEKSMKPDPKLSKEYFSA+
Sbjct: 242 ENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,000,497,130
Number of Sequences: 1393205
Number of extensions: 24966488
Number of successful extensions: 203959
Number of sequences better than 10.0: 1774
Number of HSP's better than 10.0 without gapping: 95681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163623
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 66712885146
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
SPD007e08_f |
BP044566 |
1 |
448 |
| 2 |
MWM073d10_f |
AV765885 |
4 |
398 |
| 3 |
SPD099h02_f |
BP051933 |
85 |
485 |
| 4 |
GENf038b06 |
BP059969 |
85 |
393 |
| 5 |
MF016h10_f |
BP029118 |
87 |
444 |
| 6 |
SPD082h02_f |
BP050579 |
89 |
706 |
| 7 |
MPDL072f12_f |
AV780214 |
92 |
657 |
| 8 |
SPD023f10_f |
BP045837 |
92 |
639 |
| 9 |
SPD099h05_f |
BP051936 |
92 |
638 |
| 10 |
SPD060d05_f |
BP048767 |
92 |
634 |
| 11 |
MF062c08_f |
BP031577 |
92 |
439 |
| 12 |
MF008f02_f |
BP028648 |
92 |
515 |
| 13 |
SPD026f04_f |
BP046072 |
95 |
577 |
| 14 |
MFB046f03_f |
BP037370 |
96 |
258 |
| 15 |
SPD062h10_f |
BP048983 |
96 |
671 |
| 16 |
MF060b11_f |
BP031451 |
96 |
543 |
| 17 |
MF062f04_f |
BP031592 |
96 |
555 |
| 18 |
MF055f09_f |
BP031207 |
96 |
517 |
| 19 |
MWM240a09_f |
AV768392 |
96 |
487 |
| 20 |
MFB047c02_f |
BP037407 |
96 |
349 |
| 21 |
GNf020a06 |
BP068790 |
97 |
518 |
| 22 |
SPD074g08_f |
BP049937 |
97 |
224 |
| 23 |
GNf099f03 |
BP074717 |
102 |
531 |
| 24 |
SPD087g05_f |
BP050973 |
103 |
599 |
| 25 |
SPD016c05_f |
BP045246 |
104 |
610 |
| 26 |
SPD033d05_f |
BP046617 |
106 |
630 |
| 27 |
MFB015f03_f |
BP035038 |
109 |
606 |
| 28 |
MFB013b10_f |
BP034849 |
110 |
640 |
| 29 |
MFB097b01_f |
BP041037 |
111 |
626 |
| 30 |
SPD006g03_f |
BP044502 |
114 |
718 |
| 31 |
SPD016f08_f |
BP045280 |
116 |
312 |
| 32 |
SPD100h07_f |
BP052014 |
152 |
666 |
| 33 |
MPDL036h05_f |
AV778329 |
575 |
1106 |
| 34 |
MWM206f05_f |
AV767902 |
727 |
1114 |
|
Lotus japonicus
Kazusa DNA Research Institute