Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002121A_C01 KMC002121A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84890.1|AF402609_1 TGA-type basic leucine zipper protein T... 73 3e-12
pir||S33223 transcription factor OBF3.1 - maize gi|297020|emb|CA... 70 1e-11
pir||S33222 transcription factor OBF3.2 - maize gi|297018|emb|CA... 70 1e-11
dbj|BAB44077.1| putative transcription factor HBP-1b [Oryza sati... 70 1e-11
dbj|BAB72064.1| bZIP transcription factor [Oryza sativa] 70 1e-11
>gb|AAK84890.1|AF402609_1 TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris]
Length = 460
Score = 72.8 bits (177), Expect = 3e-12
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = -3
Query: 582 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Sbjct: 424 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 460
>pir||S33223 transcription factor OBF3.1 - maize gi|297020|emb|CAA48905.1|
ocs-element binding factor 3.1 [Zea mays]
Length = 331
Score = 70.5 bits (171), Expect = 1e-11
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 582 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
M RILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Sbjct: 295 MQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 331
>pir||S33222 transcription factor OBF3.2 - maize gi|297018|emb|CAA48904.1|
ocs-element binding factor 3.2 [Zea mays]
Length = 468
Score = 70.5 bits (171), Expect = 1e-11
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 582 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
M RILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Sbjct: 432 MQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 468
>dbj|BAB44077.1| putative transcription factor HBP-1b [Oryza sativa (japonica
cultivar-group)]
Length = 472
Score = 70.5 bits (171), Expect = 1e-11
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 582 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
M RILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Sbjct: 436 MQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
>dbj|BAB72064.1| bZIP transcription factor [Oryza sativa]
Length = 332
Score = 70.5 bits (171), Expect = 1e-11
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = -3
Query: 582 MLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 472
M RILTTRQSARALLAISDYFSRLRALSSLWLARPRE
Sbjct: 296 MQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,814,425
Number of Sequences: 1393205
Number of extensions: 9680320
Number of successful extensions: 21377
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 20681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21337
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
