Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002119A_C01 KMC002119A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179802.1| hypothetical protein; protein id: At2g22120.1 [... 147 9e-35
gb|AAO42065.1| unknown protein [Arabidopsis thaliana] gi|2882734... 147 9e-35
gb|AAM65602.1| unknown [Arabidopsis thaliana] 79 2e-14
pir||B86244 hypothetical protein [imported] - Arabidopsis thalia... 79 2e-14
ref|NP_563883.1| expressed protein; protein id: At1g11020.1, sup... 79 2e-14
>ref|NP_179802.1| hypothetical protein; protein id: At2g22120.1 [Arabidopsis
thaliana] gi|25371329|pir||B84609 hypothetical protein
At2g22120 [imported] - Arabidopsis thaliana
gi|4587585|gb|AAD25813.1| hypothetical protein
[Arabidopsis thaliana]
Length = 252
Score = 147 bits (370), Expect = 9e-35
Identities = 70/76 (92%), Positives = 73/76 (95%)
Frame = -1
Query: 500 LIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPP 321
L++LGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMT S+WSPP
Sbjct: 177 LVILGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPP 236
Query: 320 VLPPEHVQQLKTLGLL 273
LP EHVQQLKTLGLL
Sbjct: 237 ALPTEHVQQLKTLGLL 252
>gb|AAO42065.1| unknown protein [Arabidopsis thaliana] gi|28827342|gb|AAO50515.1|
unknown protein [Arabidopsis thaliana]
Length = 324
Score = 147 bits (370), Expect = 9e-35
Identities = 70/76 (92%), Positives = 73/76 (95%)
Frame = -1
Query: 500 LIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPP 321
L++LGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMT S+WSPP
Sbjct: 249 LVILGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPP 308
Query: 320 VLPPEHVQQLKTLGLL 273
LP EHVQQLKTLGLL
Sbjct: 309 ALPTEHVQQLKTLGLL 324
>gb|AAM65602.1| unknown [Arabidopsis thaliana]
Length = 320
Score = 79.3 bits (194), Expect = 2e-14
Identities = 40/76 (52%), Positives = 50/76 (65%)
Frame = -1
Query: 500 LIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPP 321
++ + +F ++G+ Y L ATM QRIWQRHYHIL KR LTKEY+VED+ G T PP
Sbjct: 250 VVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYT-----PP 304
Query: 320 VLPPEHVQQLKTLGLL 273
L EH +LK L LL
Sbjct: 305 KLDAEHEGRLKMLKLL 320
>pir||B86244 hypothetical protein [imported] - Arabidopsis thaliana
gi|2252631|gb|AAB65494.1| hypothetical protein;
51018-49636 [Arabidopsis thaliana]
Length = 281
Score = 79.3 bits (194), Expect = 2e-14
Identities = 40/76 (52%), Positives = 50/76 (65%)
Frame = -1
Query: 500 LIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPP 321
++ + +F ++G+ Y L ATM QRIWQRHYHIL KR LTKEY+VED+ G T PP
Sbjct: 211 VVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYT-----PP 265
Query: 320 VLPPEHVQQLKTLGLL 273
L EH +LK L LL
Sbjct: 266 KLDAEHEGRLKMLKLL 281
>ref|NP_563883.1| expressed protein; protein id: At1g11020.1, supported by cDNA:
40765. [Arabidopsis thaliana]
gi|26449897|dbj|BAC42070.1| unknown protein [Arabidopsis
thaliana] gi|28827244|gb|AAO50466.1| unknown protein
[Arabidopsis thaliana]
Length = 321
Score = 79.3 bits (194), Expect = 2e-14
Identities = 40/76 (52%), Positives = 50/76 (65%)
Frame = -1
Query: 500 LIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPP 321
++ + +F ++G+ Y L ATM QRIWQRHYHIL KR LTKEY+VED+ G T PP
Sbjct: 251 VVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYT-----PP 305
Query: 320 VLPPEHVQQLKTLGLL 273
L EH +LK L LL
Sbjct: 306 KLDAEHEGRLKMLKLL 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,047,828
Number of Sequences: 1393205
Number of extensions: 8877413
Number of successful extensions: 22231
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22223
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
