Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002118A_C01 KMC002118A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200420.1| putative protein; protein id: At5g56090.1 [Arab... 172 2e-42
ref|NP_611855.1| CG3803-PA [Drosophila melanogaster] gi|7291690|... 90 2e-17
gb|EAA31207.1| hypothetical protein [Neurospora crassa] 83 3e-15
gb|EAA00923.1| agCP11935 [Anopheles gambiae str. PEST] 82 7e-15
gb|AAH46017.1| Similar to RIKEN cDNA 2900026G05 gene [Danio rerio] 77 2e-13
>ref|NP_200420.1| putative protein; protein id: At5g56090.1 [Arabidopsis thaliana]
gi|9758629|dbj|BAB09291.1| contains similarity to
cytochrome oxidase assembly factor~gene_id:MDA7.15
[Arabidopsis thaliana] gi|26450079|dbj|BAC42159.1|
unknown protein [Arabidopsis thaliana]
gi|28827330|gb|AAO50509.1| unknown protein [Arabidopsis
thaliana]
Length = 457
Score = 172 bits (437), Expect = 2e-42
Identities = 86/113 (76%), Positives = 100/113 (88%)
Frame = -1
Query: 609 LIRNFFENTSTVQLDHRILATATLISVAALWGATRKLDIHPAVRSVIGSIVGMAALQVTL 430
L+RNFFENT+TVQLDHR+LAT TLI++ +W TRKLDIHPAV+++IGS VGM A+QVTL
Sbjct: 343 LLRNFFENTATVQLDHRLLATTTLIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVTL 402
Query: 429 GVSTLLSYVPVSLATAHPAGALTLPTFMLLLNHTLRKPSLSLLQSLPQVVKAN 271
GVSTLLSYVPVSL +AH AGALTL T MLLLNHTLR+PS SLL+SLPQV K+N
Sbjct: 403 GVSTLLSYVPVSLGSAHQAGALTLLTLMLLLNHTLRRPSPSLLKSLPQVAKSN 455
>ref|NP_611855.1| CG3803-PA [Drosophila melanogaster] gi|7291690|gb|AAF47112.1|
CG3803-PA [Drosophila melanogaster]
gi|17946096|gb|AAL49090.1| RE54691p [Drosophila
melanogaster]
Length = 393
Score = 90.1 bits (222), Expect = 2e-17
Identities = 49/106 (46%), Positives = 68/106 (63%)
Frame = -1
Query: 603 RNFFENTSTVQLDHRILATATLISVAALWGATRKLDIHPAVRSVIGSIVGMAALQVTLGV 424
+N EN +TVQ +HRIL +T+ ALW TR++ + I ++V MA Q TLGV
Sbjct: 293 KNITENPTTVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGV 352
Query: 423 STLLSYVPVSLATAHPAGALTLPTFMLLLNHTLRKPSLSLLQSLPQ 286
+TLL+YVPV LATAH +G+L L +F L L+H +R LL+ LP+
Sbjct: 353 TTLLNYVPVPLATAHQSGSLILLSFALWLSHEVR-----LLKYLPK 393
>gb|EAA31207.1| hypothetical protein [Neurospora crassa]
Length = 492
Score = 82.8 bits (203), Expect = 3e-15
Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = -1
Query: 603 RNFFENTSTVQLDHRILATATLISVAALWGATR----KLDIHPAVRSVIGSIVGMAALQV 436
RN EN S VQLDHRILA T +V AL +R K + PA R I ++ + +LQV
Sbjct: 369 RNMLENPSLVQLDHRILAMTTFTAVCALVAYSRSGRVKAALPPAARKGITGLLHLVSLQV 428
Query: 435 TLGVSTLLSYVPVSLATAHPAGALTLPTFMLLLNHTLRKPSLSL 304
LG+STL+ VP+ LA AH AGAL L T +L+ LR P +L
Sbjct: 429 ALGISTLIYMVPIPLAAAHQAGALALLTGVLVAGQRLRIPKATL 472
>gb|EAA00923.1| agCP11935 [Anopheles gambiae str. PEST]
Length = 443
Score = 81.6 bits (200), Expect = 7e-15
Identities = 42/107 (39%), Positives = 66/107 (61%)
Frame = -1
Query: 606 IRNFFENTSTVQLDHRILATATLISVAALWGATRKLDIHPAVRSVIGSIVGMAALQVTLG 427
+RNF EN +TVQ DHR+L TATL + ++ +R+ + P ++ M +QV LG
Sbjct: 342 LRNFTENPTTVQFDHRVLGTATLTLITGMFLLSRRRLLPPRAYKAATAVAAMGWMQVALG 401
Query: 426 VSTLLSYVPVSLATAHPAGALTLPTFMLLLNHTLRKPSLSLLQSLPQ 286
++TLL+YVPV LA +H +G+L L + + L H L+ L++ LP+
Sbjct: 402 ITTLLTYVPVPLAASHQSGSLVLLSLAIWLTHELK-----LVKRLPK 443
>gb|AAH46017.1| Similar to RIKEN cDNA 2900026G05 gene [Danio rerio]
Length = 399
Score = 76.6 bits (187), Expect = 2e-13
Identities = 39/96 (40%), Positives = 58/96 (59%)
Frame = -1
Query: 606 IRNFFENTSTVQLDHRILATATLISVAALWGATRKLDIHPAVRSVIGSIVGMAALQVTLG 427
++N FEN +TVQ DHRIL +L ++ L+ +R++ + + I + MA QV LG
Sbjct: 301 LKNVFENPTTVQFDHRILGIGSLTAITGLYLFSRRMILPRRAKMAISLLTAMAYTQVVLG 360
Query: 426 VSTLLSYVPVSLATAHPAGALTLPTFMLLLNHTLRK 319
+STLL YVP LA H +G++ L TF + + LRK
Sbjct: 361 ISTLLLYVPTPLAATHQSGSVALLTFAIWVLAELRK 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,058,588
Number of Sequences: 1393205
Number of extensions: 11060558
Number of successful extensions: 30156
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 29018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30125
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
