Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002117A_C01 KMC002117A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC57787.1| OSH45 [Oryza sativa (japonica cultivar-group)] 118 6e-26
pir||T03874 probable homeobox protein OSH45, splice form OSH44 [... 118 6e-26
dbj|BAA08554.1| OSH45 [Oryza sativa (japonica cultivar-group)] 118 6e-26
pir||T03875 probable homeobox protein OSH45, splice form OSH45 [... 116 2e-25
dbj|BAB55659.1| KNOX family class 2 homeodomain protein [Oryza s... 115 3e-25
>dbj|BAC57787.1| OSH45 [Oryza sativa (japonica cultivar-group)]
Length = 181
Score = 118 bits (295), Expect = 6e-26
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = -3
Query: 574 WQAHSNWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRKR 404
WQ+H+ WPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NPSS+TS KTKRKR
Sbjct: 115 WQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRKR 171
>pir||T03874 probable homeobox protein OSH45, splice form OSH44 [similarity] -
rice gi|1805617|dbj|BAA08552.1| OSH45 [Oryza sativa
(japonica cultivar-group)]
Length = 375
Score = 118 bits (295), Expect = 6e-26
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = -3
Query: 574 WQAHSNWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRKR 404
WQ+H+ WPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NPSS+TS KTKRKR
Sbjct: 311 WQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRKR 367
>dbj|BAA08554.1| OSH45 [Oryza sativa (japonica cultivar-group)]
Length = 171
Score = 118 bits (295), Expect = 6e-26
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = -3
Query: 574 WQAHSNWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRKR 404
WQ+H+ WPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NPSS+TS KTKRKR
Sbjct: 115 WQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRKR 171
>pir||T03875 probable homeobox protein OSH45, splice form OSH45 [similarity] -
rice gi|1805618|dbj|BAA08553.1| OSH45 [Oryza sativa
(japonica cultivar-group)]
Length = 374
Score = 116 bits (290), Expect = 2e-25
Identities = 50/56 (89%), Positives = 54/56 (96%)
Frame = -3
Query: 574 WQAHSNWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRK 407
WQ+H+ WPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NPSS+TS KTKRK
Sbjct: 311 WQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRK 366
>dbj|BAB55659.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica
cultivar-group)]
Length = 317
Score = 115 bits (289), Expect = 3e-25
Identities = 50/57 (87%), Positives = 55/57 (95%)
Frame = -3
Query: 574 WQAHSNWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRKR 404
WQAHS WPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH+NP+S++S K+KRKR
Sbjct: 255 WQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKR 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,420,135
Number of Sequences: 1393205
Number of extensions: 9169133
Number of successful extensions: 20835
Number of sequences better than 10.0: 685
Number of HSP's better than 10.0 without gapping: 20288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20811
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
