Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002116A_C01 KMC002116A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196865.1| putative protein; protein id: At5g13610.1, supp... 160 1e-38
gb|AAM63653.1| unknown [Arabidopsis thaliana] 158 5e-38
dbj|BAB63588.1| P0403C05.8 [Oryza sativa (japonica cultivar-group)] 149 2e-35
gb|AAM61045.1| unknown [Arabidopsis thaliana] 147 9e-35
ref|NP_564963.1| expressed protein; protein id: At1g69380.1, sup... 145 3e-34
>ref|NP_196865.1| putative protein; protein id: At5g13610.1, supported by cDNA:
26016. [Arabidopsis thaliana] gi|9758026|dbj|BAB08687.1|
gb|AAF67764.1~gene_id:MSH12.7~similar to unknown protein
[Arabidopsis thaliana] gi|22022566|gb|AAM83240.1|
AT5g13610/MSH12_7 [Arabidopsis thaliana]
gi|23308429|gb|AAN18184.1| At5g13610/MSH12_7
[Arabidopsis thaliana]
Length = 402
Score = 160 bits (404), Expect = 1e-38
Identities = 79/96 (82%), Positives = 86/96 (89%)
Frame = -2
Query: 557 LVGKANSNLADVILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEH 378
LVGKAN LADVILKLGLFERSDIAWKDAKYGQIWE+LRDEFELTQ FA+LD+KLKFVEH
Sbjct: 302 LVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFVEH 361
Query: 377 NIRFLQEILQNRKSDFLEWLIIALIGAEILLSLYDI 270
N+RFLQEILQNRKS LEWLII LI EI +S Y++
Sbjct: 362 NVRFLQEILQNRKSATLEWLIIILISMEIAISFYNM 397
>gb|AAM63653.1| unknown [Arabidopsis thaliana]
Length = 402
Score = 158 bits (399), Expect = 5e-38
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = -2
Query: 557 LVGKANSNLADVILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEH 378
LVGKAN LADVILKLGLFERSDIAWKDAKYGQIWE+LRDEFELTQ FA+LD+KLKF EH
Sbjct: 302 LVGKANVILADVILKLGLFERSDIAWKDAKYGQIWEFLRDEFELTQSFANLDYKLKFXEH 361
Query: 377 NIRFLQEILQNRKSDFLEWLIIALIGAEILLSLYDI 270
N+RFLQEILQNRKS LEWLII LI EI +S Y++
Sbjct: 362 NVRFLQEILQNRKSATLEWLIIILISMEIAISFYNM 397
>dbj|BAB63588.1| P0403C05.8 [Oryza sativa (japonica cultivar-group)]
Length = 405
Score = 149 bits (377), Expect = 2e-35
Identities = 71/98 (72%), Positives = 87/98 (88%)
Frame = -2
Query: 557 LVGKANSNLADVILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEH 378
LVGKANSNLADVI++LGLF+RS+IAWK++ Y QI EYLR+E+EL QRF SLDFKLKFVEH
Sbjct: 302 LVGKANSNLADVIIRLGLFDRSEIAWKNSNYAQILEYLREEYELNQRFGSLDFKLKFVEH 361
Query: 377 NIRFLQEILQNRKSDFLEWLIIALIGAEILLSLYDIIQ 264
NI FLQE+LQNR+SD LEW +I L+ EI++SLY+II+
Sbjct: 362 NIHFLQEVLQNRRSDLLEWGVIILLIIEIVISLYEIIK 399
>gb|AAM61045.1| unknown [Arabidopsis thaliana]
Length = 373
Score = 147 bits (371), Expect = 9e-35
Identities = 66/105 (62%), Positives = 90/105 (84%)
Frame = -2
Query: 557 LVGKANSNLADVILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEH 378
LVGKANSN+ADVILK+GLFERS+IAW++A+Y QI+EYLR+E+E++QRF LD+KLKF+EH
Sbjct: 269 LVGKANSNIADVILKVGLFERSEIAWREARYAQIYEYLREEYEISQRFGDLDYKLKFIEH 328
Query: 377 NIRFLQEILQNRKSDFLEWLIIALIGAEILLSLYDIIQRVSHETL 243
NI FLQE++QNR+SD LEW II L+ E +S+Y+I++ + +L
Sbjct: 329 NIHFLQEVMQNRQSDLLEWCIIFLLAIENAISIYEIVRESAGASL 373
>ref|NP_564963.1| expressed protein; protein id: At1g69380.1, supported by cDNA:
108982. [Arabidopsis thaliana]
gi|12325085|gb|AAG52494.1|AC018364_12 hypothetical
protein; 13477-15179 [Arabidopsis thaliana]
gi|12597794|gb|AAG60106.1|AC073178_17 hypothetical
protein [Arabidopsis thaliana]
Length = 373
Score = 145 bits (367), Expect = 3e-34
Identities = 65/105 (61%), Positives = 89/105 (83%)
Frame = -2
Query: 557 LVGKANSNLADVILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEH 378
LVGKANSN+ADVILK+GLFERS+IAW++A+Y QI+EYLR+E+E++QRF LD+KLKF+EH
Sbjct: 269 LVGKANSNIADVILKVGLFERSEIAWREARYAQIYEYLREEYEISQRFGDLDYKLKFIEH 328
Query: 377 NIRFLQEILQNRKSDFLEWLIIALIGAEILLSLYDIIQRVSHETL 243
NI FLQE++QNR+SD LEW II L+ E + +Y+I++ + +L
Sbjct: 329 NIHFLQEVMQNRQSDLLEWCIIFLLAIENAIGIYEIVRESAGASL 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,895,775
Number of Sequences: 1393205
Number of extensions: 7962362
Number of successful extensions: 15635
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15631
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
