Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002113A_C01 KMC002113A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181658.1| hypothetical protein; protein id: At2g41250.1, ... 230 1e-59
dbj|BAC15484.1| contains ESTs AU091627(C0596),D15410(C0596A)~sim... 227 1e-58
pir||C86277 F14L17.7 protein - Arabidopsis thaliana gi|7262672|g... 120 2e-26
gb|AAO42097.1| unknown protein [Arabidopsis thaliana] 120 2e-26
ref|NP_172883.1| unknown protein; protein id: At1g14310.1 [Arabi... 112 6e-24
>ref|NP_181658.1| hypothetical protein; protein id: At2g41250.1, supported by cDNA:
gi_17979160 [Arabidopsis thaliana]
gi|25408736|pir||F84839 hypothetical protein At2g41250
[imported] - Arabidopsis thaliana
gi|3894197|gb|AAC78546.1| hypothetical protein
[Arabidopsis thaliana] gi|17979161|gb|AAL49776.1|
unknown protein [Arabidopsis thaliana]
gi|22136692|gb|AAM91665.1| unknown protein [Arabidopsis
thaliana]
Length = 290
Score = 230 bits (587), Expect = 1e-59
Identities = 104/130 (80%), Positives = 123/130 (94%)
Frame = -1
Query: 647 LYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAV 468
LY+Y+ T++AW LCDPDA +VFKA++++GVK+A+VSNFDTRLRPLLRAL+C++WFDAVAV
Sbjct: 161 LYSYFTTEQAWKLCDPDAGKVFKAIKEAGVKVAIVSNFDTRLRPLLRALRCEDWFDAVAV 220
Query: 467 SAEVAAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFK 288
SAEV AEKPNPTIFLKACELL V PEDAVHVGDDRRND+WGARDAGCDAWLWGS+V SFK
Sbjct: 221 SAEVEAEKPNPTIFLKACELLEVNPEDAVHVGDDRRNDVWGARDAGCDAWLWGSEVTSFK 280
Query: 287 EVAERIGVQV 258
+VA+RIGV+V
Sbjct: 281 QVAQRIGVKV 290
>dbj|BAC15484.1| contains ESTs AU091627(C0596),D15410(C0596A)~similar to Arabidopsis
thaliana chromosome 2, At2g41250~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|22831190|dbj|BAC16048.1| P0496C02.7 [Oryza sativa
(japonica cultivar-group)]
Length = 304
Score = 227 bits (578), Expect = 1e-58
Identities = 104/121 (85%), Positives = 113/121 (92%)
Frame = -1
Query: 647 LYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAV 468
LY YY T KAW LCDPDA+ VF+ALRK+GVK AVVSNFDTRLRPLL+AL CD+WFDAVAV
Sbjct: 153 LYQYYTTAKAWQLCDPDAKYVFEALRKAGVKTAVVSNFDTRLRPLLQALNCDHWFDAVAV 212
Query: 467 SAEVAAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFK 288
SAEVAAEKPNPTIFLKACE LGVKPE+AVH+GDDRRND+WGARDAGCDAWLWGSDV+SFK
Sbjct: 213 SAEVAAEKPNPTIFLKACEFLGVKPEEAVHIGDDRRNDLWGARDAGCDAWLWGSDVYSFK 272
Query: 287 E 285
E
Sbjct: 273 E 273
>pir||C86277 F14L17.7 protein - Arabidopsis thaliana
gi|7262672|gb|AAF43930.1|AC012188_7 Contains similarity
to a hypothetical protein from Arabidopsis thaliana
gb|AC005662.2 and contains a haloacid dehalogenase-like
hydrolase PF|00702 domain. EST gb|F15167 comes from
this gene
Length = 254
Score = 120 bits (300), Expect = 2e-26
Identities = 64/126 (50%), Positives = 78/126 (61%)
Frame = -1
Query: 647 LYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAV 468
+Y YY +AWHL + A E L+ +GVK+AVVSNFDTRLR LL+ L + FDAV V
Sbjct: 125 VYQYYANGEAWHLPE-GAYETMSLLKDAGVKMAVVSNFDTRLRKLLKDLNVIDMFDAVIV 183
Query: 467 SAEVAAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFK 288
SAEV EKP+ IF A E + V AVHVGDD D GA G WLWG DV +F
Sbjct: 184 SAEVGYEKPDERIFKSALEQISVDVNRAVHVGDDEGADKGGANAIGIACWLWGEDVQTFS 243
Query: 287 EVAERI 270
++ +RI
Sbjct: 244 DIQKRI 249
>gb|AAO42097.1| unknown protein [Arabidopsis thaliana]
Length = 250
Score = 120 bits (300), Expect = 2e-26
Identities = 64/126 (50%), Positives = 78/126 (61%)
Frame = -1
Query: 647 LYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAV 468
+Y YY +AWHL + A E L+ +GVK+AVVSNFDTRLR LL+ L + FDAV V
Sbjct: 121 VYQYYANGEAWHLPE-GAYETMSLLKDAGVKMAVVSNFDTRLRKLLKDLNVIDMFDAVIV 179
Query: 467 SAEVAAEKPNPTIFLKACELLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFK 288
SAEV EKP+ IF A E + V AVHVGDD D GA G WLWG DV +F
Sbjct: 180 SAEVGYEKPDERIFKSALEQISVDVNRAVHVGDDEGADKGGANAIGIACWLWGEDVQTFS 239
Query: 287 EVAERI 270
++ +RI
Sbjct: 240 DIQKRI 245
>ref|NP_172883.1| unknown protein; protein id: At1g14310.1 [Arabidopsis thaliana]
Length = 265
Score = 112 bits (279), Expect = 6e-24
Identities = 64/137 (46%), Positives = 78/137 (56%), Gaps = 11/137 (8%)
Frame = -1
Query: 647 LYNYYMTDKAWHLCDPDAEEVFKALRKSGVKLAVVSNFDTRLRPLLRALKCDNWFDAVAV 468
+Y YY +AWHL + A E L+ +GVK+AVVSNFDTRLR LL+ L + FDAV V
Sbjct: 125 VYQYYANGEAWHLPE-GAYETMSLLKDAGVKMAVVSNFDTRLRKLLKDLNVIDMFDAVIV 183
Query: 467 SAEVAAEKPNPTIFLKA-----------CELLGVKPEDAVHVGDDRRNDIWGARDAGCDA 321
SAEV EKP+ IF A E + V AVHVGDD D GA G
Sbjct: 184 SAEVGYEKPDERIFKSALGIGILHSKLNAEQISVDVNRAVHVGDDEGADKGGANAIGIAC 243
Query: 320 WLWGSDVHSFKEVAERI 270
WLWG DV +F ++ +RI
Sbjct: 244 WLWGEDVQTFSDIQKRI 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,034,818
Number of Sequences: 1393205
Number of extensions: 12553278
Number of successful extensions: 44014
Number of sequences better than 10.0: 619
Number of HSP's better than 10.0 without gapping: 41853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43678
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
