Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002112A_C01 KMC002112A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa] 62 4e-09
ref|NP_567543.1| Expressed protein; protein id: At4g17890.1 [Ara... 52 3e-06
gb|AAK25887.1|AF360177_1 unknown protein [Arabidopsis thaliana] 52 3e-06
pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana... 52 3e-06
gb|AAO66537.1| putative zinc finger protein [Oryza sativa (japon... 52 3e-06
>gb|AAK00450.1|AC060755_20 unknown protein [Oryza sativa]
Length = 407
Score = 62.0 bits (149), Expect = 4e-09
Identities = 30/39 (76%), Positives = 34/39 (86%)
Frame = -1
Query: 276 LVFQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 160
L FQ +DLSS+KN+AGETGKKLTSLAS +MSD QDRIL
Sbjct: 369 LSFQASQDLSSIKNMAGETGKKLTSLASNIMSDLQDRIL 407
>ref|NP_567543.1| Expressed protein; protein id: At4g17890.1 [Arabidopsis thaliana]
gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 276 LVFQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 160
L FQ Q+DLSSL NIAGET KKL +LAS + SD QDR+L
Sbjct: 375 LSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413
>gb|AAK25887.1|AF360177_1 unknown protein [Arabidopsis thaliana]
Length = 413
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 276 LVFQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 160
L FQ Q+DLSSL NIAGET KKL +LAS + SD QDR+L
Sbjct: 375 LSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413
>pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana
gi|2894598|emb|CAA17132.1| putative protein [Arabidopsis
thaliana] gi|7268541|emb|CAB78791.1| putative protein
[Arabidopsis thaliana]
Length = 1082
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = -1
Query: 276 LVFQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 160
L FQ Q+DLSSL NIAGET KKL +LAS + SD QDR+L
Sbjct: 375 LSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413
>gb|AAO66537.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 412
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/37 (72%), Positives = 31/37 (82%)
Frame = -1
Query: 270 FQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 160
FQ +DLSSLKN+AGETGKKLTS+AS +SD DRIL
Sbjct: 377 FQASQDLSSLKNMAGETGKKLTSIASNFISDL-DRIL 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,039,748
Number of Sequences: 1393205
Number of extensions: 11011491
Number of successful extensions: 41783
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 38799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41636
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
