Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002110A_C01 KMC002110A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187109.1| unknown protein; protein id: At3g04590.1 [Arabi... 54 2e-06
emb|CAA10643.1| SAP1 protein [Antirrhinum majus] 49 5e-05
ref|NP_198211.1| putative protein; protein id: At5g28590.1 [Arab... 40 0.043
gb|AAF88014.1| contains similarity to Antirrhinum majus SAP1 pro... 37 0.37
gb|AAF05069.1|AF109723_1 ATP-binding cassette transporter [Candi... 35 1.1
>ref|NP_187109.1| unknown protein; protein id: At3g04590.1 [Arabidopsis thaliana]
gi|6175163|gb|AAF04889.1|AC011437_4 unknown protein
[Arabidopsis thaliana]
Length = 418
Score = 54.3 bits (129), Expect = 2e-06
Identities = 36/96 (37%), Positives = 51/96 (52%), Gaps = 15/96 (15%)
Frame = -3
Query: 708 LGFRQAVERSSGNQIQGNDE------HQA-MGGSHFMIQQL--GLHVTPPRSTDW----- 571
+GF +E + N ++GNDE HQA +GG H + Q G+H+T R ++W
Sbjct: 326 MGFPPGMESTGRNPMRGNDEQHDHHHHQAGLGGPHHFMMQAPQGIHMTHSRPSEWRGGGN 385
Query: 570 GAHPDSRNTAYELTGRPGHGAHQSPENGGYD-QIPD 466
H Y+L+GR G H+S ENG Y+ QIPD
Sbjct: 386 SGHDGRGGGGYDLSGRIG---HESSENGDYEQQIPD 418
>emb|CAA10643.1| SAP1 protein [Antirrhinum majus]
Length = 300
Score = 49.3 bits (116), Expect = 5e-05
Identities = 33/85 (38%), Positives = 39/85 (45%)
Frame = -3
Query: 720 SASSLGFRQAVERSSGNQIQGNDEHQAMGGSHFMIQQLGLHVTPPRSTDWGAHPDSRNTA 541
SA L FR + SG Q+ G GG+ F+IQ +H+TP
Sbjct: 241 SAPGLSFRSPAD--SGIQMGG-------GGNPFLIQNRTMHMTP---------------- 275
Query: 540 YELTGRPGHGAHQSPENGGYDQIPD 466
E G HG HQSPENG YD IPD
Sbjct: 276 MEWIGSADHGMHQSPENGDYDHIPD 300
>ref|NP_198211.1| putative protein; protein id: At5g28590.1 [Arabidopsis thaliana]
Length = 216
Score = 39.7 bits (91), Expect = 0.043
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = -3
Query: 714 SSLGFRQAVERSSGNQIQGNDEHQAM------GGSHFMIQQ-LGLHVTPPRSTDWGAHPD 556
S LG+ +E S N NDEH + GG+HFM++ G+H+T R ++WG
Sbjct: 153 SLLGYHPDMESSGRNP---NDEHHTITSSALGGGAHFMMKPPQGMHMTHARPSEWG---- 205
Query: 555 SRNTAYELTGR 523
T Y+L+G+
Sbjct: 206 --GTGYDLSGK 214
>gb|AAF88014.1| contains similarity to Antirrhinum majus SAP1 protein (GB:AJ132349)
[Arabidopsis thaliana]
Length = 369
Score = 36.6 bits (83), Expect = 0.37
Identities = 24/69 (34%), Positives = 36/69 (51%), Gaps = 7/69 (10%)
Frame = -3
Query: 714 SSLGFRQAVERSSGNQIQGNDEHQAM------GGSHFMIQQ-LGLHVTPPRSTDWGAHPD 556
S LG+ +E S N NDEH + GG+HFM++ G+H+T R ++WG
Sbjct: 104 SLLGYHPDMESSGRNP---NDEHHTITSSALGGGAHFMMKPPQGMHMTHARPSEWG---- 156
Query: 555 SRNTAYELT 529
T Y+L+
Sbjct: 157 --GTGYDLS 163
>gb|AAF05069.1|AF109723_1 ATP-binding cassette transporter [Candida glabrata]
Length = 1499
Score = 35.0 bits (79), Expect = 1.1
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 17/71 (23%)
Frame = +3
Query: 447 KPSQILNQEFDHILHSQETGA------LHD-----LVFLSAHKQYFLSPDEHPSQWTGEV 593
+PS IL QEFD +L Q G L D + + +H + PD +P++W EV
Sbjct: 1057 QPSAILMQEFDRLLFLQRGGKTVYFGDLGDGCKTMIDYFESHGSHKCPPDANPAEWMLEV 1116
Query: 594 ------SHANQ 608
SHANQ
Sbjct: 1117 VGAAPGSHANQ 1127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,874,264
Number of Sequences: 1393205
Number of extensions: 13650813
Number of successful extensions: 31155
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31141
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
