Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002109A_C02 KMC002109A_c02
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179668.1| beta-expansin pollen allergen protein; protein ... 71 1e-11
pir||T50657 beta-expansin [imported] - Arabidopsis thaliana (fra... 71 1e-11
ref|NP_567803.1| beta-expansin pollen allergen protein; protein ... 70 3e-11
gb|AAM64784.1| putative beta-expansin/allergen protein [Arabidop... 70 3e-11
gb|AAF72990.1|AF261277_1 beta-expansin [Oryza sativa] gi|1387653... 55 1e-06
>ref|NP_179668.1| beta-expansin pollen allergen protein; protein id: At2g20750.1,
supported by cDNA: 109135. [Arabidopsis thaliana]
gi|20138056|sp|Q9SKU2|EXB1_ARATH Beta-expansin 1
precursor (At-EXPB1) (Ath-ExpBeta-1.5)
gi|25344435|pir||H84592 beta-expansin [imported] -
Arabidopsis thaliana gi|4454473|gb|AAD20920.1|
beta-expansin pollen allergen protein [Arabidopsis
thaliana] gi|21536717|gb|AAM61049.1| beta-expansin 1
precursor (At-EXPB1) (Ath-ExpBeta-1.5) [Arabidopsis
thaliana] gi|28393090|gb|AAO41979.1| putative
beta-expansin pollen allergen protein [Arabidopsis
thaliana] gi|28827426|gb|AAO50557.1| putative
beta-expansin pollen allergen protein [Arabidopsis
thaliana]
Length = 271
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Frame = -2
Query: 634 GPIKGPFSVKLST-STGRSLSARDVIPSHWVPKATYTSRLNFYP 506
GP+KGPFSVKL+T S ++LSA DVIPS+WVPKATYTSRLNF P
Sbjct: 226 GPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFSP 269
>pir||T50657 beta-expansin [imported] - Arabidopsis thaliana (fragment)
gi|2224913|gb|AAB61709.1| beta-expansin [Arabidopsis
thaliana]
Length = 259
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/44 (77%), Positives = 39/44 (88%), Gaps = 1/44 (2%)
Frame = -2
Query: 634 GPIKGPFSVKLST-STGRSLSARDVIPSHWVPKATYTSRLNFYP 506
GP+KGPFSVKL+T S ++LSA DVIPS+WVPKATYTSRLNF P
Sbjct: 214 GPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFSP 257
>ref|NP_567803.1| beta-expansin pollen allergen protein; protein id: At4g28250.1,
supported by cDNA: 33023., supported by cDNA:
gi_14532723 [Arabidopsis thaliana]
gi|20138391|sp|Q9M0I2|EXB3_ARATH Beta-expansin 3
precursor (At-EXPB3) (Ath-ExpBeta-1.6)
gi|14532724|gb|AAK64163.1| putative
beta-expansin/allergen protein [Arabidopsis thaliana]
gi|22136782|gb|AAM91735.1| putative
beta-expansin/allergen protein [Arabidopsis thaliana]
Length = 264
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/45 (68%), Positives = 39/45 (85%), Gaps = 1/45 (2%)
Frame = -2
Query: 637 GGPIKGPFSVKLST-STGRSLSARDVIPSHWVPKATYTSRLNFYP 506
GGP+KGPFS+KL+T S G++LSA DV+P +W PKATY+SRLNF P
Sbjct: 218 GGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFSP 262
>gb|AAM64784.1| putative beta-expansin/allergen protein [Arabidopsis thaliana]
Length = 258
Score = 69.7 bits (169), Expect = 3e-11
Identities = 31/45 (68%), Positives = 39/45 (85%), Gaps = 1/45 (2%)
Frame = -2
Query: 637 GGPIKGPFSVKLST-STGRSLSARDVIPSHWVPKATYTSRLNFYP 506
GGP+KGPFS+KL+T S G++LSA DV+P +W PKATY+SRLNF P
Sbjct: 212 GGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFSP 256
>gb|AAF72990.1|AF261277_1 beta-expansin [Oryza sativa] gi|13876539|gb|AAK43515.1|AC020666_25
beta-expansin [Oryza sativa (japonica cultivar-group)]
Length = 269
Score = 54.7 bits (130), Expect = 1e-06
Identities = 21/41 (51%), Positives = 32/41 (77%)
Frame = -2
Query: 631 PIKGPFSVKLSTSTGRSLSARDVIPSHWVPKATYTSRLNFY 509
P+K PFS++++T +G+SL A+DVIP +W+P A Y S + FY
Sbjct: 229 PLKAPFSIRVTTESGKSLIAKDVIPVNWMPDAIYVSNVQFY 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,706,821
Number of Sequences: 1393205
Number of extensions: 12878565
Number of successful extensions: 27141
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 26339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27129
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
