Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002106A_C01 KMC002106A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181853.1| unknown protein; protein id: At2g43240.1 [Arabi... 65 5e-10
gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803] 37 0.20
ref|NP_252886.1| probable two-component sensor [Pseudomonas aeru... 34 1.3
ref|NP_465635.1| similar to FMN-containing NADPH-linked nitro/fl... 33 2.9
gb|AAB91452.1| CTG26 alternate open reading frame [Homo sapiens] 32 3.8
>ref|NP_181853.1| unknown protein; protein id: At2g43240.1 [Arabidopsis thaliana]
gi|25408848|pir||G84863 hypothetical protein At2g43240
[imported] - Arabidopsis thaliana
gi|3763933|gb|AAC64313.1| unknown protein [Arabidopsis
thaliana]
Length = 806
Score = 65.1 bits (157), Expect = 5e-10
Identities = 44/101 (43%), Positives = 53/101 (51%), Gaps = 1/101 (0%)
Frame = -2
Query: 534 VRAATIVCAAVAASTRSRLLQAWALEMQGKHVDATVELSKICLLLRIFPPEESSPEMEMV 355
+ AA +V AAVAA TRS LQAWA EMEMV
Sbjct: 736 IDAARMVSAAVAARTRSWFLQAWA-------------------------------EMEMV 764
Query: 354 SRGLQKHLKLEQRKHLMFLF-GKVCGEDSHRIAREALGLMH 235
+RGL+K +KLE+R+ L+ F G C EDS R A EALGL+H
Sbjct: 765 ARGLEKLMKLEERQSLLKTFVGMCCSEDSQRSAAEALGLVH 805
>gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803]
Length = 6975
Score = 36.6 bits (83), Expect = 0.20
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 535 CSCCNNCVCSCCCKYTLPSSTG 470
CSCCN C+C C CKY + S TG
Sbjct: 5937 CSCCNCCLCFCDCKYVM-SDTG 5957
>ref|NP_252886.1| probable two-component sensor [Pseudomonas aeruginosa PA01]
gi|11352382|pir||A83121 probable two-component sensor
PA4197 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950408|gb|AAG07584.1|AE004836_3 probable
two-component sensor [Pseudomonas aeruginosa PAO1]
Length = 758
Score = 33.9 bits (76), Expect = 1.3
Identities = 28/101 (27%), Positives = 44/101 (42%)
Frame = +3
Query: 225 VDQNASNQGLLLQSCDCPHHKLYQRETLGVFFVPVLSVSVGPD*PSPFQEKIPQEEIFVE 404
+D A ++GLLL + D P + LG+ P+L+ + G +PF PQ + ++
Sbjct: 118 LDLQAGDEGLLLVASDTPQSAAL--DWLGLLLAPLLAAARGVTRAAPFLAADPQPALLLD 175
Query: 405 EGISLTVLPLHQHVFLAFREPKPVEDGSVYLQQQLHTQLLQ 527
L FLA +P E YL H QL++
Sbjct: 176 GEAQAVEL---NQAFLALLGERPREAWRAYLPAN-HGQLVR 212
>ref|NP_465635.1| similar to FMN-containing NADPH-linked nitro/flavin reductase
[Listeria monocytogenes EGD-e] gi|25310635|pir||AG1338
FMN-containing NADPH-linked nitro/flavin reductase
homolog lmo2111 [imported] - Listeria monocytogenes
(strain EGD-e) gi|16411581|emb|CAD00189.1| similar to
FMN-containing NADPH-linked nitro/flavin reductase
[Listeria monocytogenes]
Length = 243
Score = 32.7 bits (73), Expect = 2.9
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 315 FFVPVLSVSVG-PD*PSPFQEKIPQEEIFVEEGISLTVLPL 434
F +PV+ + +G PD +P + ++P+E ++ EE V+PL
Sbjct: 154 FVMPVVGLCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPL 194
>gb|AAB91452.1| CTG26 alternate open reading frame [Homo sapiens]
Length = 124
Score = 32.3 bits (72), Expect = 3.8
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = -1
Query: 535 CSCCNNCVCSCCCKYTLP 482
C CC C C CCC + LP
Sbjct: 104 CCCCCCCCCCCCCCWLLP 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,744,189
Number of Sequences: 1393205
Number of extensions: 9428245
Number of successful extensions: 25836
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25523
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
