Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002105A_C01 KMC002105A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabi... 156 2e-37
dbj|BAC16013.1| contains ESTs AU062478(C11349),AU092192(C11349),... 103 1e-21
gb|AAM60990.1| unknown [Arabidopsis thaliana] 103 1e-21
ref|NP_189909.1| putative protein; protein id: At3g43230.1, supp... 103 1e-21
ref|NP_219497.1| LAs17 Binding protein; Lsb3p [Saccharomyces cer... 67 1e-10
>ref|NP_174273.1| unknown protein; protein id: At1g29800.1 [Arabidopsis thaliana]
gi|25054840|gb|AAN71910.1| unknown protein [Arabidopsis
thaliana]
Length = 510
Score = 156 bits (394), Expect = 2e-37
Identities = 74/91 (81%), Positives = 82/91 (89%)
Frame = -2
Query: 513 SAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQS 334
SAAVG+ GRA+EAD+RAG GGYAACYTYSCSKGAFVGCSLEGSI TRT ENSRFYGSQS
Sbjct: 404 SAAVGVTGRAVEADIRAGSGGYAACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQS 463
Query: 333 ITSTDILLGSLPRPPAAAILYRSLADLYGKL 241
+ ++DILLGSLPRPPAAA LYR+L DLY K+
Sbjct: 464 LAASDILLGSLPRPPAAAALYRALGDLYQKM 494
>dbj|BAC16013.1| contains ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)] gi|24060033|dbj|BAC21490.1| contains
ESTs
AU062478(C11349),AU092192(C11349),
AU076219(R10022)~similar to senescence-associated
putative protein [Oryza sativa (japonica
cultivar-group)]
Length = 461
Score = 103 bits (257), Expect = 1e-21
Identities = 53/91 (58%), Positives = 65/91 (71%)
Frame = -2
Query: 513 SAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQS 334
SAA G GRA EADVRA + G CYTYSCSK AFVG SLEG++V TR++ N RFYG
Sbjct: 370 SAAAGPIGRAFEADVRASEKGSGLCYTYSCSK-AFVGVSLEGNVVTTRSETNLRFYGDAY 428
Query: 333 ITSTDILLGSLPRPPAAAILYRSLADLYGKL 241
+T+TDIL G + +P AA LY +L DL+ K+
Sbjct: 429 LTTTDILFGKVEKPRAAQPLYSALDDLFSKM 459
>gb|AAM60990.1| unknown [Arabidopsis thaliana]
Length = 486
Score = 103 bits (257), Expect = 1e-21
Identities = 52/91 (57%), Positives = 65/91 (71%)
Frame = -2
Query: 513 SAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQS 334
SAA G GR LEAD+RAGD G CYTYS SKGAFVG SLEG++V TR N +FYG
Sbjct: 394 SAAAGPIGRVLEADLRAGDKGSGVCYTYSRSKGAFVGVSLEGNLVATRRDMNVKFYGDPY 453
Query: 333 ITSTDILLGSLPRPPAAAILYRSLADLYGKL 241
++++DILLG + +P AA LY +L +LY +L
Sbjct: 454 LSTSDILLGMVDQPKAAEPLYTALRELYARL 484
>ref|NP_189909.1| putative protein; protein id: At3g43230.1, supported by cDNA:
107823., supported by cDNA: gi_17979084, supported by
cDNA: gi_20465340 [Arabidopsis thaliana]
gi|11357848|pir||T49237 hypothetical protein F7K15.80 -
Arabidopsis thaliana gi|7649363|emb|CAB89044.1| putative
protein [Arabidopsis thaliana]
gi|17979085|gb|AAL49810.1| unknown protein [Arabidopsis
thaliana] gi|20465341|gb|AAM20074.1| unknown protein
[Arabidopsis thaliana]
Length = 485
Score = 103 bits (257), Expect = 1e-21
Identities = 52/91 (57%), Positives = 65/91 (71%)
Frame = -2
Query: 513 SAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQS 334
SAA G GR LEAD+RAGD G CYTYS SKGAFVG SLEG++V TR N +FYG
Sbjct: 393 SAAAGPIGRVLEADLRAGDKGSGVCYTYSRSKGAFVGVSLEGNLVATRRDMNVKFYGDPY 452
Query: 333 ITSTDILLGSLPRPPAAAILYRSLADLYGKL 241
++++DILLG + +P AA LY +L +LY +L
Sbjct: 453 LSTSDILLGMVDQPKAAEPLYTALRELYARL 483
>ref|NP_219497.1| LAs17 Binding protein; Lsb3p [Saccharomyces cerevisiae]
gi|1362490|pir||S58653 hypothetical protein YFR024c-a -
yeast (Saccharomyces cerevisiae)
Length = 451
Score = 67.0 bits (162), Expect = 1e-10
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = -2
Query: 513 SAAVGIAGRALEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVITRTQENSRFYGSQS 334
S + G GR+ EA A GG AA + YS SKG F G S+EGS +I R + N +FYG +
Sbjct: 121 SVSAGPLGRSAEAAASASAGGVAAVFAYSKSKGLFAGVSVEGSAIIERREANRKFYG-DN 179
Query: 333 ITSTDILLGSLPRPPAAAILYRSL 262
T+ IL G + PPA L+R L
Sbjct: 180 CTAKMILSGRIRPPPAVDPLFRVL 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,524,855
Number of Sequences: 1393205
Number of extensions: 9301927
Number of successful extensions: 26328
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 24231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26018
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
