Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002103A_C01 KMC002103A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65608.1| putative senescence-associated protein 12 [Arabid... 136 2e-31
ref|NP_179374.1| putative senescence-associated protein 12; prot... 136 2e-31
dbj|BAB63916.1| ERD7 protein [Arabidopsis thaliana] 136 2e-31
ref|NP_190693.1| putative protein; protein id: At3g51250.1, supp... 134 1e-30
gb|AAL79714.1|AC091774_5 putative senescence-associated protein ... 129 2e-29
>gb|AAM65608.1| putative senescence-associated protein 12 [Arabidopsis thaliana]
Length = 452
Score = 136 bits (342), Expect = 2e-31
Identities = 66/83 (79%), Positives = 78/83 (93%)
Frame = -2
Query: 605 FSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIR 426
F+KVCDAVEVAG+NVMSTSSTVTTELVDH+YG +AAEAT+EGL+AAG+ALGTAW AFKIR
Sbjct: 365 FNKVCDAVEVAGRNVMSTSSTVTTELVDHKYGGKAAEATNEGLDAAGYALGTAWVAFKIR 424
Query: 425 KAINPKSVFKPTTLAQSGAKAAA 357
KAINPKSV KP+TLA++ ++AA
Sbjct: 425 KAINPKSVLKPSTLAKTAIRSAA 447
>ref|NP_179374.1| putative senescence-associated protein 12; protein id: At2g17840.1,
supported by cDNA: 40806., supported by cDNA:
gi_13272392, supported by cDNA: gi_16226783, supported
by cDNA: gi_19698944 [Arabidopsis thaliana]
gi|7486987|pir||T00840 probable senescence-related
protein [imported] - Arabidopsis thaliana
gi|13272393|gb|AAK17135.1|AF325067_1 putative
senescence-related protein [Arabidopsis thaliana]
gi|16226784|gb|AAL16261.1|AF428331_1 probable senescence
related protein [Arabidopsis thaliana]
gi|19698945|gb|AAL91208.1| putative senescence-related
protein [Arabidopsis thaliana]
gi|24899805|gb|AAN65117.1| putative senescence-related
protein [Arabidopsis thaliana]
Length = 452
Score = 136 bits (342), Expect = 2e-31
Identities = 66/83 (79%), Positives = 78/83 (93%)
Frame = -2
Query: 605 FSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIR 426
F+KVCDAVEVAG+NVMSTSSTVTTELVDH+YG +AAEAT+EGL+AAG+ALGTAW AFKIR
Sbjct: 365 FNKVCDAVEVAGRNVMSTSSTVTTELVDHKYGGKAAEATNEGLDAAGYALGTAWVAFKIR 424
Query: 425 KAINPKSVFKPTTLAQSGAKAAA 357
KAINPKSV KP+TLA++ ++AA
Sbjct: 425 KAINPKSVLKPSTLAKTAIRSAA 447
>dbj|BAB63916.1| ERD7 protein [Arabidopsis thaliana]
Length = 441
Score = 136 bits (342), Expect = 2e-31
Identities = 66/83 (79%), Positives = 78/83 (93%)
Frame = -2
Query: 605 FSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIR 426
F+KVCDAVEVAG+NVMSTSSTVTTELVDH+YG +AAEAT+EGL+AAG+ALGTAW AFKIR
Sbjct: 350 FNKVCDAVEVAGRNVMSTSSTVTTELVDHKYGGKAAEATNEGLDAAGYALGTAWVAFKIR 409
Query: 425 KAINPKSVFKPTTLAQSGAKAAA 357
KAINPKSV KP+TLA++ ++AA
Sbjct: 410 KAINPKSVLKPSTLAKTAIRSAA 432
>ref|NP_190693.1| putative protein; protein id: At3g51250.1, supported by cDNA:
gi_15215687 [Arabidopsis thaliana]
gi|11282421|pir||T45756 hypothetical protein F24M12.290
- Arabidopsis thaliana gi|6562277|emb|CAB62647.1|
putative protein [Arabidopsis thaliana]
gi|15215688|gb|AAK91390.1| AT3g51250/F24M12_290
[Arabidopsis thaliana] gi|21464565|gb|AAM52237.1|
AT3g51250/F24M12_290 [Arabidopsis thaliana]
Length = 463
Score = 134 bits (336), Expect = 1e-30
Identities = 65/84 (77%), Positives = 76/84 (90%)
Frame = -2
Query: 605 FSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIR 426
FSK+CDAVEVAGKNVMSTSSTVTTELV+HRYG +AAEAT+EGL+AAGHA GTAW AFKIR
Sbjct: 376 FSKICDAVEVAGKNVMSTSSTVTTELVNHRYGTKAAEATNEGLDAAGHAFGTAWVAFKIR 435
Query: 425 KAINPKSVFKPTTLAQSGAKAAAK 354
KA NPK+V KP++LA+S ++ AK
Sbjct: 436 KAFNPKNVIKPSSLAKSVSELKAK 459
>gb|AAL79714.1|AC091774_5 putative senescence-associated protein [Oryza sativa]
Length = 419
Score = 129 bits (325), Expect = 2e-29
Identities = 62/83 (74%), Positives = 74/83 (88%)
Frame = -2
Query: 605 FSKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIR 426
F K+CDAVEVAG NV+STSSTVTT LV H+YGE+AA AT+EG++AAGHA+GTAWA FKIR
Sbjct: 328 FGKICDAVEVAGTNVLSTSSTVTTGLVSHKYGEKAAAATNEGMDAAGHAIGTAWAVFKIR 387
Query: 425 KAINPKSVFKPTTLAQSGAKAAA 357
+A+NPKSV KPT+LA+S KAAA
Sbjct: 388 QALNPKSVLKPTSLAKSTIKAAA 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,105,125
Number of Sequences: 1393205
Number of extensions: 10431781
Number of successful extensions: 26275
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 25252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26225
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
