KMC002101A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002101A_C01 KMC002101A_c01
acagaacctctctgtgatttAGGGATTAATCTTGAGACATTTATTTTAAATTCAAGTGTA
ATAAAGATCCCTAACATTTATTCAGGGATTAATGCGCTCAAAATTTTTTTGGCTGCATAT
GTAAGAAATCTTATCAGATCAGTACAGTGTTTTACTCCGCTAAATATTATTCCTGTACGT
ATTCTAATCCTGGTGGTCACTCGTTAACTGTGATAACATGAGCCGAATCATCATCATCAG
AACTAGTAATTGGTTGCACTATTCCCCGAGGAGGCACAAAATTTGCGAGGGTTGCTAGTT
CATCAACAGCTTCAGAAATGTTCTCAACACAAATAACAATGTCTATTAGCAGTGATGCCA
CCGTAGCAGCTGGCACCATCTCCATGGGATCAGCTCCTTCCCATGGGTTTGCTCTTAGAA
CCGATTTAAGAGACTCAGCAGCATTTTTAGCATGTCTAACATAGAGGTTCGGTGCTGATG
ACTTG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002101A_C01 KMC002101A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86217 protein T27G7.12 [imported] - Arabidopsis thaliana g... 59 3e-08
ref|NP_187774.1| hypothetical protein; protein id: At3g11680.1 [... 59 3e-08
ref|NP_172320.1| hypothetical protein; protein id: At1g08440.1 [... 59 3e-08
ref|NP_172319.1| hypothetical protein; protein id: At1g08430.1 [... 55 3e-07
ref|NP_180292.1| hypothetical protein; protein id: At2g27240.1 [... 55 3e-07
>pir||F86217 protein T27G7.12 [imported] - Arabidopsis thaliana
gi|6664309|gb|AAF22891.1|AC006932_8 T27G7.12
[Arabidopsis thaliana]
Length = 523
Score = 58.9 bits (141), Expect = 3e-08
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Frame = -2
Query: 481 SSAPNLYVRHAKNAAESLKSVLRANPWEGADPMEMVPAATVASLLIDIVICVENISEAVD 302
SS+ +++V ++++A ++L ++L++ +P++M+ T SLLIDIV E ISE+V
Sbjct: 353 SSSFDIHVVNSQSACKTLSTLLKSGILNDVEPLQMISLMTTVSLLIDIVNLTEKISESVH 412
Query: 301 ELATLANFVPPR----------GIVQPITSSDDDDSAHVITV 206
ELA+ A F + G P S DDDD HV+T+
Sbjct: 413 ELASAAKFKNKKKPSKSNSGSIGQAMPNKSHDDDD--HVVTI 452
>ref|NP_187774.1| hypothetical protein; protein id: At3g11680.1 [Arabidopsis
thaliana] gi|6041820|gb|AAF02135.1|AC009918_7
hypothetical protein [Arabidopsis thaliana]
Length = 488
Score = 58.9 bits (141), Expect = 3e-08
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 22/116 (18%)
Frame = -2
Query: 481 SSAPNLYVRHAKNAAESLKSVLRAN-PWEGADPMEMVPAATVASLLIDIVICVENISEAV 305
S+ N ++ ++K A ++LK L+++ P D +E++P T+AS+LI++V CVE I EAV
Sbjct: 350 SACVNAHIDNSKKAIKNLKIALKSSYPETYKDLLEIIPGVTMASILIEVVNCVEKIYEAV 409
Query: 304 DELATLANF----------------VPPRGIVQPITSSD----DDDSAHV-ITVNE 200
+E + LA+F + RG V+P+ D D+ S HV ITV++
Sbjct: 410 EEFSGLAHFKETLDSKLSAEIGQHQLLHRGCVKPVLDGDNEKEDNSSCHVLITVHD 465
>ref|NP_172320.1| hypothetical protein; protein id: At1g08440.1 [Arabidopsis
thaliana]
Length = 501
Score = 58.9 bits (141), Expect = 3e-08
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Frame = -2
Query: 481 SSAPNLYVRHAKNAAESLKSVLRANPWEGADPMEMVPAATVASLLIDIVICVENISEAVD 302
SS+ +++V ++++A ++L ++L++ +P++M+ T SLLIDIV E ISE+V
Sbjct: 331 SSSFDIHVVNSQSACKTLSTLLKSGILNDVEPLQMISLMTTVSLLIDIVNLTEKISESVH 390
Query: 301 ELATLANFVPPR----------GIVQPITSSDDDDSAHVITV 206
ELA+ A F + G P S DDDD HV+T+
Sbjct: 391 ELASAAKFKNKKKPSKSNSGSIGQAMPNKSHDDDD--HVVTI 430
>ref|NP_172319.1| hypothetical protein; protein id: At1g08430.1 [Arabidopsis
thaliana] gi|6664308|gb|AAF22890.1|AC006932_7 T27G7.11
[Arabidopsis thaliana]
Length = 493
Score = 55.5 bits (132), Expect = 3e-07
Identities = 30/90 (33%), Positives = 54/90 (59%)
Frame = -2
Query: 484 KSSAPNLYVRHAKNAAESLKSVLRANPWEGADPMEMVPAATVASLLIDIVICVENISEAV 305
KSS+ +++V +++ A +SL ++L++ +P++M+ T S+LIDIV E ISE+V
Sbjct: 333 KSSSSDIHVSNSQAACKSLSTLLKSGILNDVEPLQMISLMTTVSMLIDIVNLTEKISESV 392
Query: 304 DELATLANFVPPRGIVQPITSSDDDDSAHV 215
ELA+ A F + ++P + DS +
Sbjct: 393 HELASAARF---KNKMRPTVLYEKSDSGSI 419
>ref|NP_180292.1| hypothetical protein; protein id: At2g27240.1 [Arabidopsis
thaliana] gi|25407873|pir||E84670 hypothetical protein
At2g27240 [imported] - Arabidopsis thaliana
gi|5306273|gb|AAD42005.1| hypothetical protein
[Arabidopsis thaliana]
Length = 506
Score = 55.5 bits (132), Expect = 3e-07
Identities = 29/69 (42%), Positives = 46/69 (66%)
Frame = -2
Query: 484 KSSAPNLYVRHAKNAAESLKSVLRANPWEGADPMEMVPAATVASLLIDIVICVENISEAV 305
K S+ +L+V++AK+A +SL ++L + + +P+E+V T SLLIDI+ E I E++
Sbjct: 356 KPSSSDLHVQNAKSACKSLTNLLNSGILKEVEPLELVSLLTAISLLIDIINLTEKILESL 415
Query: 304 DELATLANF 278
ELAT A F
Sbjct: 416 HELATAAKF 424
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,103,946
Number of Sequences: 1393205
Number of extensions: 7240257
Number of successful extensions: 20064
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 18988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19913
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GENf037d01 |
BP059934 |
1 |
362 |
2 |
GENf089d05 |
BP062107 |
21 |
192 |
3 |
GNf050h07 |
BP071105 |
21 |
432 |
4 |
GENf036g06 |
BP059906 |
48 |
492 |
|
Lotus japonicus
Kazusa DNA Research Institute