Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002100A_C01 KMC002100A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09661 ascorbate oxidase promoter-binding protein AOBP - wi... 111 2e-24
gb|AAM61191.1| H-protein promoter binding factor-2a [Arabidopsis... 98 2e-20
gb|AAL48235.1|AF446362_1 AT5g62430/K19B1_4 [Arabidopsis thaliana... 98 2e-20
ref|NP_201049.1| Dof zinc finger protein; protein id: At5g62430.... 98 2e-20
ref|NP_190334.1| Dof zinc finger protein; protein id: At3g47500.... 98 3e-20
>pir||T09661 ascorbate oxidase promoter-binding protein AOBP - winter squash
gi|1669341|dbj|BAA08094.1| AOBP (ascorbate oxidase
promoter-binding protein) [Cucurbita maxima]
Length = 380
Score = 111 bits (277), Expect = 2e-24
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 3/100 (3%)
Frame = -2
Query: 433 RDVDDVSEKDSLQNEEPSKQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESLSGGSM 254
RD D++ + D+ + ++P KQ+NGSVL PKTLRIDDPNEAAKSSIW TLGIKN+S+ +
Sbjct: 283 RDGDEL-QADNSEMKDPPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDL 341
Query: 253 FKAFKSTKGDEKNHVD---SSVLRANPAALSRSLNFHENS 143
F+S KGD K++V S VL+ANPAALSRSL FHE S
Sbjct: 342 SNVFQS-KGDLKSNVSEVLSPVLQANPAALSRSLTFHERS 380
>gb|AAM61191.1| H-protein promoter binding factor-2a [Arabidopsis thaliana]
Length = 447
Score = 98.2 bits (243), Expect = 2e-20
Identities = 56/95 (58%), Positives = 66/95 (68%), Gaps = 3/95 (3%)
Frame = -2
Query: 424 DDVSEKDSLQNEEPSKQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESL-SGGSMFK 248
++ S++DS E KQR G +L PKTLRIDDPNEAAKSSIW TLGIKNE++ G MFK
Sbjct: 354 EESSKRDS---ETERKQRTGCILVPKTLRIDDPNEAAKSSIWTTLGIKNEAMCKAGGMFK 410
Query: 247 AF--KSTKGDEKNHVDSSVLRANPAALSRSLNFHE 149
F K+ + +S VL ANPAALSRS NFHE
Sbjct: 411 GFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHE 445
>gb|AAL48235.1|AF446362_1 AT5g62430/K19B1_4 [Arabidopsis thaliana] gi|23505819|gb|AAN28769.1|
At5g62430/K19B1_4 [Arabidopsis thaliana]
Length = 237
Score = 98.2 bits (243), Expect = 2e-20
Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = -2
Query: 379 KQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESLSGGSMFKAFKSTKGDEKNHVDSS 200
KQRNGSVL PKTLRIDDPNEAAKSSIW TLGIKNE + G F + K K K ++S
Sbjct: 160 KQRNGSVLVPKTLRIDDPNEAAKSSIWTTLGIKNEVMFNG--FGSKKEVKLSNKEETETS 217
Query: 199 -VLRANPAALSRSLNFHE 149
VL ANPAALSRS+NFHE
Sbjct: 218 LVLCANPAALSRSINFHE 235
>ref|NP_201049.1| Dof zinc finger protein; protein id: At5g62430.1 [Arabidopsis
thaliana] gi|10178074|dbj|BAB11493.1| H-protein promoter
binding factor-like protein [Arabidopsis thaliana]
Length = 298
Score = 98.2 bits (243), Expect = 2e-20
Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = -2
Query: 379 KQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESLSGGSMFKAFKSTKGDEKNHVDSS 200
KQRNGSVL PKTLRIDDPNEAAKSSIW TLGIKNE + G F + K K K ++S
Sbjct: 221 KQRNGSVLVPKTLRIDDPNEAAKSSIWTTLGIKNEVMFNG--FGSKKEVKLSNKEETETS 278
Query: 199 -VLRANPAALSRSLNFHE 149
VL ANPAALSRS+NFHE
Sbjct: 279 LVLCANPAALSRSINFHE 296
>ref|NP_190334.1| Dof zinc finger protein; protein id: At3g47500.1, supported by
cDNA: 113639., supported by cDNA: gi_17473785, supported
by cDNA: gi_3386545 [Arabidopsis thaliana]
gi|11357324|pir||T45710 H-protein promoter binding
factor-2a [imported] - Arabidopsis thaliana
gi|3386546|gb|AAC28390.1| H-protein promoter binding
factor-2a [Arabidopsis thaliana]
gi|6522533|emb|CAB61976.1| H-protein promoter binding
factor-2a [Arabidopsis thaliana]
gi|17473786|gb|AAL38328.1| H-protein promoter binding
factor-2a [Arabidopsis thaliana]
gi|22136158|gb|AAM91157.1| H-protein promoter binding
factor-2a [Arabidopsis thaliana]
Length = 448
Score = 97.8 bits (242), Expect = 3e-20
Identities = 57/92 (61%), Positives = 64/92 (68%), Gaps = 3/92 (3%)
Frame = -2
Query: 415 SEKDSLQNEEPSKQRNGSVLTPKTLRIDDPNEAAKSSIWATLGIKNESL-SGGSMFKAF- 242
S+KD NE KQ+ G VL PKTLRIDDPNEAAKSSIW TLGIKNE++ G MFK F
Sbjct: 358 SKKD---NETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAMCKAGGMFKGFD 414
Query: 241 -KSTKGDEKNHVDSSVLRANPAALSRSLNFHE 149
K+ + +S VL ANPAALSRS NFHE
Sbjct: 415 HKTKMYNNDKAENSPVLSANPAALSRSHNFHE 446
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,487,493
Number of Sequences: 1393205
Number of extensions: 6141762
Number of successful extensions: 17195
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 16802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17175
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
