Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002098A_C01 KMC002098A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97232.1| contains similarity to polyA polymerase~gene_id:... 130 7e-30
ref|NP_197758.2| putative protein; protein id: At5g23690.1, supp... 130 7e-30
gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|221372... 130 7e-30
ref|NP_190452.1| Poly(A) polymerase, putative; protein id: At3g4... 112 3e-24
ref|NP_174130.1| hypothetical protein; protein id: At1g28090.1 [... 52 4e-06
>dbj|BAA97232.1| contains similarity to polyA polymerase~gene_id:MQM1.4 [Arabidopsis
thaliana]
Length = 499
Score = 130 bits (328), Expect = 7e-30
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Frame = -1
Query: 508 LAVHNGGNLLEA*TIYRRIDNPHDDEFPELLDPSD-LDAEALADEILDLEESVKETLLQM 332
LAVHN G++LEA I ++I PHD F EL++P + LD + L DE++DL+ S+++ L QM
Sbjct: 350 LAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEVMDLDASIEDALNQM 409
Query: 331 TTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGR-NFLSKPVIKTDYES 155
T + +S+AM+ YPQAP+ D+VFI L +YL+A IF C++ R F +K K +Y S
Sbjct: 410 TDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYGS 469
Query: 154 LAHGDLPEVWHMLAMVVFDIVYPLHLDRD 68
L G PE+ H+ A VVFD V+PL+L ++
Sbjct: 470 LNSGYFPEIRHVFARVVFDTVFPLNLSQE 498
>ref|NP_197758.2| putative protein; protein id: At5g23690.1, supported by cDNA:
gi_18377861 [Arabidopsis thaliana]
Length = 527
Score = 130 bits (328), Expect = 7e-30
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Frame = -1
Query: 508 LAVHNGGNLLEA*TIYRRIDNPHDDEFPELLDPSD-LDAEALADEILDLEESVKETLLQM 332
LAVHN G++LEA I ++I PHD F EL++P + LD + L DE++DL+ S+++ L QM
Sbjct: 378 LAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEVMDLDASIEDALNQM 437
Query: 331 TTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGR-NFLSKPVIKTDYES 155
T + +S+AM+ YPQAP+ D+VFI L +YL+A IF C++ R F +K K +Y S
Sbjct: 438 TDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYGS 497
Query: 154 LAHGDLPEVWHMLAMVVFDIVYPLHLDRD 68
L G PE+ H+ A VVFD V+PL+L ++
Sbjct: 498 LNSGYFPEIRHVFARVVFDTVFPLNLSQE 526
>gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|22137254|gb|AAM91472.1|
AT5g23690/MQM1_4 [Arabidopsis thaliana]
Length = 527
Score = 130 bits (328), Expect = 7e-30
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Frame = -1
Query: 508 LAVHNGGNLLEA*TIYRRIDNPHDDEFPELLDPSD-LDAEALADEILDLEESVKETLLQM 332
LAVHN G++LEA I ++I PHD F EL++P + LD + L DE++DL+ S+++ L QM
Sbjct: 378 LAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEVMDLDASIEDALNQM 437
Query: 331 TTRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGR-NFLSKPVIKTDYES 155
T + +S+AM+ YPQAP+ D+VFI L +YL+A IF C++ R F +K K +Y S
Sbjct: 438 TDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRIGFEAKQGSKIEYGS 497
Query: 154 LAHGDLPEVWHMLAMVVFDIVYPLHLDRD 68
L G PE+ H+ A VVFD V+PL+L ++
Sbjct: 498 LNSGYFPEIRHVFARVVFDTVFPLNLSQE 526
>ref|NP_190452.1| Poly(A) polymerase, putative; protein id: At3g48830.1 [Arabidopsis
thaliana] gi|11358180|pir||T49279 hypothetical protein
T21J18.100 - Arabidopsis thaliana
gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis
thaliana]
Length = 881
Score = 112 bits (279), Expect = 3e-24
Identities = 55/117 (47%), Positives = 78/117 (66%)
Frame = -1
Query: 508 LAVHNGGNLLEA*TIYRRIDNPHDDEFPELLDPSDLDAEALADEILDLEESVKETLLQMT 329
LAVHNGG++LEA R++ PH+ F ELL+P ++D++ L DE++D + S+KE L QMT
Sbjct: 374 LAVHNGGDVLEAVKNTRKVTKPHNRSFFELLEPEEMDSQTLLDEVMDFDSSIKEALGQMT 433
Query: 328 TRHMVSQAMADYPQAPHPDMVFISLGMYLKAISIFYCLRARAGRNFLSKPVIKTDYE 158
+S+AMA YPQAP+ DMVFI L +YL A IF C++ + F+ K K + E
Sbjct: 434 DGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECVKENGQKGFVPKQDSKREPE 490
>ref|NP_174130.1| hypothetical protein; protein id: At1g28090.1 [Arabidopsis
thaliana] gi|25513643|pir||F86406 52.2K hypothetical
protein F13K9.19 - Arabidopsis thaliana
gi|12322982|gb|AAG51472.1|AC069471_3 hypothetical
protein [Arabidopsis thaliana]
Length = 462
Score = 52.0 bits (123), Expect = 4e-06
Identities = 29/92 (31%), Positives = 50/92 (53%), Gaps = 3/92 (3%)
Frame = -1
Query: 508 LAVHNGGNLLEA*TIYRRIDNPHDDEFPELLDPSDLDAEA---LADEILDLEESVKETLL 338
LA+++ +L EA I R H+ F EL P A++ ++ +++ L ES++
Sbjct: 352 LAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQQVIKLAESIRSAAR 411
Query: 337 QMTTRHMVSQAMADYPQAPHPDMVFISLGMYL 242
++ R ++ AM+ YPQAP DMV I + Y+
Sbjct: 412 KLNNRDYIANAMSKYPQAPGSDMVGILVKTYV 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,138,989
Number of Sequences: 1393205
Number of extensions: 9173230
Number of successful extensions: 24612
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 23125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24508
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
