Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002097A_C01 KMC002097A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 39 0.040
ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arab... 33 1.3
ref|NP_036146.1| endoplasmic reticulum (ER) to nucleus signallin... 33 1.3
gb|AAO64403.1| NdaA [Nodularia spumigena] 33 2.2
gb|AAL82383.1| McyB [Microcystis aeruginosa] 32 2.9
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 38.5 bits (88), Expect = 0.040
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = -3
Query: 451 VEIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSI 329
++I VL CLCL + ++++ W M EY V +SWT++ ++
Sbjct: 263 MDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
>ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arabidopsis thaliana]
gi|25407584|pir||D85256 hypothetical protein AT4g22390
[imported] - Arabidopsis thaliana
gi|5738370|emb|CAB52813.1| putative protein [Arabidopsis
thaliana] gi|7269085|emb|CAB79194.1| putative protein
[Arabidopsis thaliana]
Length = 394
Score = 33.5 bits (75), Expect = 1.3
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = -3
Query: 451 VEIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSI 329
++I VL C+CL D +H W + EY +SWT++ +
Sbjct: 259 MDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRV 299
>ref|NP_036146.1| endoplasmic reticulum (ER) to nucleus signalling 2;
inositol-requiring 1 (Yeast homologue);
inositol-requiring 1 beta (yeast); inositol-requiring 1
(yeast) [Mus musculus] gi|3766209|gb|AAC64400.1| IRE1
[Mus musculus]
Length = 911
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 143 TKVFWWEFDIFHTYYHLRLQYD*PQPALHLLATHQGRVSISTQAYQPSMTQNDIITLKML 322
T ++ W D H HL L D LH L G + + +YQ + TQ + ++L
Sbjct: 229 TGIYTWHQDGLHQLPHLTLARD----TLHFLVLRWGHIRLPASSYQDTATQFSSLDTQLL 284
Query: 323 IT 328
+T
Sbjct: 285 MT 286
>gb|AAO64403.1| NdaA [Nodularia spumigena]
Length = 2607
Score = 32.7 bits (73), Expect = 2.2
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 394 HFVGWKMTEYGVPESWTRMLSISYQHFQCNDVILRHRWLVCLCGDGNTSL---MRRQKME 224
HF+ W+ E+G+ ++W R L I+ +F D LR LV LC G + R+ +E
Sbjct: 2187 HFINWEKIEFGINQNW-RCLQIAQINF---DAYLRET-LVTLCSGGTLYIPDSTDREDLE 2241
Query: 223 G 221
G
Sbjct: 2242 G 2242
>gb|AAL82383.1| McyB [Microcystis aeruginosa]
Length = 2114
Score = 32.3 bits (72), Expect = 2.9
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 394 HFVGWKMTEYGVPESWTRMLSISYQHFQCNDVILRHRWLVCLCGDG 257
HF+ W+ E+G+ ESW R L I+ +F D LR V LC G
Sbjct: 1694 HFIDWEKREFGINESW-RCLQIAQINF---DAYLRET-CVTLCSGG 1734
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,079,596
Number of Sequences: 1393205
Number of extensions: 8811279
Number of successful extensions: 20451
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 20054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20446
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
