Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002096A_C01 KMC002096A_c01
(450 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50847 hypothetical protein 110K5.11 [imported] - sorghum ... 54 4e-07
ref|NP_196647.1| putative protein; protein id: At5g10860.1, supp... 50 5e-06
ref|NP_216922.1| hypothetical protein Rv2406c [Mycobacterium tub... 37 0.055
ref|NP_336960.1| CBS domain protein [Mycobacterium tuberculosis ... 37 0.055
dbj|BAA99562.1| inosine-5'-monophosphate dehydrogenase [Chlorell... 36 0.12
>pir||T50847 hypothetical protein 110K5.11 [imported] - sorghum (fragment)
gi|5410350|gb|AAD43044.1|AF124045_3 unknown [Sorghum
bicolor]
Length = 46
Score = 53.9 bits (128), Expect = 4e-07
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -3
Query: 448 PVIDGKGMLGMVSIGDVVRAVVSEHRQEX*PLECFYTG 335
PVIDG GMLGMVSIGDVVRAVV+EHR+E L + G
Sbjct: 7 PVIDGTGMLGMVSIGDVVRAVVAEHREELNRLNDYIQG 44
>ref|NP_196647.1| putative protein; protein id: At5g10860.1, supported by cDNA:
gi_13605727, supported by cDNA: gi_17978886 [Arabidopsis
thaliana] gi|20455364|sp|Q9LEV3|UMP3_ARATH Protein
At5g10860, mitochondrial precursor
gi|11358290|pir||T50795 hypothetical protein T30N20_130
- Arabidopsis thaliana gi|8979720|emb|CAB96841.1|
putative protein [Arabidopsis thaliana]
gi|13605728|gb|AAK32857.1|AF361845_1
AT5g10860/T30N20_130 [Arabidopsis thaliana]
gi|17978887|gb|AAL47413.1| AT5g10860/T30N20_130
[Arabidopsis thaliana]
Length = 206
Score = 50.4 bits (119), Expect = 5e-06
Identities = 25/38 (65%), Positives = 28/38 (72%)
Frame = -3
Query: 448 PVIDGKGMLGMVSIGDVVRAVVSEHRQEX*PLECFYTG 335
PVI KGM+GMVSIGDVVRAVV EHR+E L + G
Sbjct: 167 PVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQG 204
>ref|NP_216922.1| hypothetical protein Rv2406c [Mycobacterium tuberculosis H37Rv]
gi|7477188|pir||A70684 hypothetical protein Rv2406c -
Mycobacterium tuberculosis (strain H37RV)
gi|1655653|emb|CAB03721.1| hypothetical protein Rv2406c
[Mycobacterium tuberculosis H37Rv]
Length = 142
Score = 37.0 bits (84), Expect = 0.055
Identities = 17/37 (45%), Positives = 26/37 (69%)
Frame = -3
Query: 448 PVIDGKGMLGMVSIGDVVRAVVSEHRQEX*PLECFYT 338
PV+DGK ++G+VSIGDVV++ + E E L+ + T
Sbjct: 104 PVLDGKKLIGIVSIGDVVKSRMGELEAEQQQLQSYIT 140
>ref|NP_336960.1| CBS domain protein [Mycobacterium tuberculosis CDC1551]
gi|13882194|gb|AAK46774.1| CBS domain protein
[Mycobacterium tuberculosis CDC1551]
Length = 97
Score = 37.0 bits (84), Expect = 0.055
Identities = 17/37 (45%), Positives = 26/37 (69%)
Frame = -3
Query: 448 PVIDGKGMLGMVSIGDVVRAVVSEHRQEX*PLECFYT 338
PV+DGK ++G+VSIGDVV++ + E E L+ + T
Sbjct: 59 PVLDGKKLIGIVSIGDVVKSRMGELEAEQQQLQSYIT 95
>dbj|BAA99562.1| inosine-5'-monophosphate dehydrogenase [Chlorella vulgaris]
Length = 182
Score = 35.8 bits (81), Expect = 0.12
Identities = 20/41 (48%), Positives = 24/41 (57%)
Frame = -3
Query: 448 PVIDGKGMLGMVSIGDVVRAVVSEHRQEX*PLECFYTGRLL 326
PV+ LGMVSI DVV VV EH++E P + G LL
Sbjct: 67 PVVHEGKYLGMVSIRDVVHVVVEEHKEEVGPPARVHPGILL 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,201,428
Number of Sequences: 1393205
Number of extensions: 6718611
Number of successful extensions: 15415
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 15026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15407
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
