Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002095A_C01 KMC002095A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198865.1| RRM-containing RNA-binding protein, putative; p... 125 4e-28
ref|XP_147510.2| TAF15 RNA polymerase II, TATA box binding prote... 85 9e-16
ref|NP_497637.1| Predicted CDS, putative protein, nematode speci... 84 1e-15
ref|NP_741525.1| Putative protein, nematode specific [Caenorhabd... 82 4e-15
ref|NP_631961.1| TBP-associated factor 15 isoform 1; TAF15 RNA p... 82 6e-15
>ref|NP_198865.1| RRM-containing RNA-binding protein, putative; protein id:
At5g40490.1 [Arabidopsis thaliana]
gi|9758076|dbj|BAB08520.1| contains similarity to RNA
binding protein~gene_id:MNF13.1 [Arabidopsis thaliana]
gi|22531255|gb|AAM97131.1| ribonucleoprotein-like
[Arabidopsis thaliana]
Length = 423
Score = 125 bits (315), Expect = 4e-28
Identities = 79/164 (48%), Positives = 89/164 (54%), Gaps = 50/164 (30%)
Frame = -1
Query: 616 GRSGAYGGYGSEFGGYGG--YAGAMGPYRGDPSLGFAGRYGGS---FSRG-YDLGG---- 467
GRSG YGGYG EFGGYGG Y G +GPYRG+P+LG++GRYGG ++RG Y +GG
Sbjct: 260 GRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGY 319
Query: 466 ------------------YGGASESYGA-YGA----------GAAAGGGSSAAGAYQ-GG 377
YGG S SYG YG+ G A GGG G Y GG
Sbjct: 320 GGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGG 379
Query: 376 YDASLAGGYG----GASGGSFY---GSRGGY---GAGRYHPYGR 275
AGGYG G GGSFY G RGGY G+GRYHPYGR
Sbjct: 380 VGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGSGRYHPYGR 423
Score = 73.6 bits (179), Expect = 2e-12
Identities = 50/119 (42%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = -1
Query: 613 RSGAYGGYGSEFGGY--GGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYG 440
RS GGYG +GG GGY G GPY+ G YGG S GY GGYGG +G
Sbjct: 225 RSNFGGGYGDGYGGGHGGGYGGPGGPYKS------GGGYGGGRSGGY--GGYGG---EFG 273
Query: 439 AYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGAS-----GGSFYGSRGGYGAGRYHPYG 278
YG G GG G Y+G +G YGG GG G GGYG G YG
Sbjct: 274 GYGGGGYGGG----VGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMYG 328
Score = 53.9 bits (128), Expect = 2e-06
Identities = 35/94 (37%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Frame = -1
Query: 535 GDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAAGGGSSAA-GAYQGGYDASLA 359
GD F G YG + G+ GGYGG G Y +G GGG S G Y G +
Sbjct: 222 GDSRSNFGGGYGDGYGGGHG-GGYGGPG---GPYKSGGGYGGGRSGGYGGYGGEFGGYGG 277
Query: 358 GGYGGASG-----------GSFYGSRGGYGAGRY 290
GGYGG G G + G GGY G Y
Sbjct: 278 GGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGY 311
>ref|XP_147510.2| TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated
factor, 68 kDa [Mus musculus]
gi|26342028|dbj|BAC34676.1| unnamed protein product [Mus
musculus]
Length = 557
Score = 84.7 bits (208), Expect = 9e-16
Identities = 50/116 (43%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Frame = -1
Query: 634 SSAAYAGRSGAYGGYGSEFGGYGG-----YAGAMGPYRGDPSLGFAGRYGGSFSRGYDLG 470
S Y G G G YG + GGYGG Y G G Y GD G+ G GG G D G
Sbjct: 430 SGGGYGGDRG--GSYGGDRGGYGGDRGGSYGGDRGGYGGDRG-GYGGDRGGY---GGDRG 483
Query: 469 GYGGASESYGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYG 302
GYGG YG + A GG +G+ GGY +GGYGG G + G RGGYG
Sbjct: 484 GYGGDRGGYGGDRSRGAYGGDRGGSGSGSGGYGGDRSGGYGGDRSGGYGGDRGGYG 539
Score = 75.5 bits (184), Expect = 5e-13
Identities = 55/120 (45%), Positives = 59/120 (48%), Gaps = 6/120 (5%)
Frame = -1
Query: 634 SSAAYAG-RSGAYGGYGSEFGG-YGGYAGAMGPYRGDPSLGFAGRYGGSFSR-GYDLGGY 464
S Y G RSG GGYG + GG YGG G G RG G G YGG G D GGY
Sbjct: 421 SGGGYGGDRSG--GGYGGDRGGSYGGDRGGYGGDRGGSYGGDRGGYGGDRGGYGGDRGGY 478
Query: 463 GGASESYGAYGAGAAAGGGSSAAGAYQG--GYDASLAGGYGGASGGSFYGSR-GGYGAGR 293
GG G YG GG + GAY G G S +GGYGG G + G R GGYG R
Sbjct: 479 GG---DRGGYGGDRGGYGGDRSRGAYGGDRGGSGSGSGGYGGDRSGGYGGDRSGGYGGDR 535
Score = 74.3 bits (181), Expect = 1e-12
Identities = 53/122 (43%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Frame = -1
Query: 616 GRSGAYGGYGSEF--GGYGG------YAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYG 461
GR G GGYG + GGYGG Y G G G G+ G GGS+ G D GGYG
Sbjct: 408 GRGGDRGGYGGDRSGGGYGGDRSGGGYGGDRGGSYGGDRGGYGGDRGGSY--GGDRGGYG 465
Query: 460 GASESYGAYGAGAAAGGGSSAAGAYQGGYDASLA-GGYGGASGGSFYGSRGGYGAGRYHP 284
G YG G GG G +GGY + G YGG GGS GS GGYG R
Sbjct: 466 GDRGGYG--GDRGGYGGDRGGYGGDRGGYGGDRSRGAYGGDRGGSGSGS-GGYGGDRSGG 522
Query: 283 YG 278
YG
Sbjct: 523 YG 524
Score = 65.5 bits (158), Expect = 6e-10
Identities = 49/107 (45%), Positives = 52/107 (47%), Gaps = 6/107 (5%)
Frame = -1
Query: 595 GYGSEFG--GYGGYAGAMGPYRGDPSLGFAGRYGGSFS---RGYDLGG-YGGASESYGAY 434
GYG E G G GG G G Y GD S G YGG S G D GG YGG YG
Sbjct: 396 GYGGERGYRGRGGRGGDRGGYGGDRS---GGGYGGDRSGGGYGGDRGGSYGGDRGGYGG- 451
Query: 433 GAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGR 293
G + GG G +GGY GGYGG GG + G RGGYG R
Sbjct: 452 DRGGSYGGDRGGYGGDRGGYGGD-RGGYGGDRGG-YGGDRGGYGGDR 496
Score = 62.8 bits (151), Expect = 4e-09
Identities = 40/86 (46%), Positives = 44/86 (50%), Gaps = 1/86 (1%)
Frame = -1
Query: 547 GPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAAGG-GSSAAGAYQGGYD 371
G +RG G G Y G RG D GGYGG S G YG + GG G G+Y G
Sbjct: 390 GDFRGRGYGGERG-YRGRGGRGGDRGGYGG-DRSGGGYGGDRSGGGYGGDRGGSYGGD-- 445
Query: 370 ASLAGGYGGASGGSFYGSRGGYGAGR 293
GGYGG GGS+ G RGGYG R
Sbjct: 446 ---RGGYGGDRGGSYGGDRGGYGGDR 468
Score = 48.1 bits (113), Expect = 9e-05
Identities = 51/150 (34%), Positives = 53/150 (35%), Gaps = 38/150 (25%)
Frame = -1
Query: 613 RSGAYGGYGSEFGGYGGYAGAMG----PYRGD-----PSLG------------------- 518
R G GG GGY G G G P GD PS G
Sbjct: 324 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 383
Query: 517 --------FAGR-YGGSFSRGY-DLGGYGGASESYGAYGAGAAAGGGSSAAGAYQGGYDA 368
F GR YGG RGY GG GG YG +G GG S GGY
Sbjct: 384 DSRPSGGDFRGRGYGGE--RGYRGRGGRGGDRGGYGGDRSGGGYGGDRSG-----GGYGG 436
Query: 367 SLAGGYGGASGGSFYGSRGGYGAGRYHPYG 278
G YGG GG + G RGG G YG
Sbjct: 437 DRGGSYGGDRGG-YGGDRGGSYGGDRGGYG 465
Score = 38.9 bits (89), Expect = 0.057
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 12/131 (9%)
Frame = -1
Query: 634 SSAAYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGA 455
SS GR+ +YG S++G Y G + S Y S + Y
Sbjct: 93 SSGGQGGRAPSYGQ--SDYGQQDSYDQQSGYDQHQGSYDEQSNYQQHDSYNQNQQSYHSQ 150
Query: 454 SESYG-----------AYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGG 308
E+Y YG GGS G +GGYD G G+SG G RGG
Sbjct: 151 RENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSG----GDRGG 206
Query: 307 Y-GAGRYHPYG 278
+ G + YG
Sbjct: 207 FKNFGGHRDYG 217
Score = 38.5 bits (88), Expect = 0.074
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = -1
Query: 595 GYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAA 416
GYG GY GY D S G YGG G + GY S+SYG+Y +
Sbjct: 27 GYGQTPQGYSGYGQTT-----DSSYG--QNYGGYSGYGQNQSGY---SQSYGSYENQKQS 76
Query: 415 GGGSSAAGAYQGGYDASLAGGYGGAS---GGSFYGSRGGY 305
G + QG + +GG GG + G S YG + Y
Sbjct: 77 SYGQQSYN-NQGQQNTESSGGQGGRAPSYGQSDYGQQDSY 115
Score = 37.4 bits (85), Expect = 0.17
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -1
Query: 631 SAAYAG-RSGAYGG-----YGSEFGGYGGYAGAMGPYRGD 530
S Y G RSG YGG YG + GGYGG G YR D
Sbjct: 512 SGGYGGDRSGGYGGDRSGGYGGDRGGYGGKMGGRNDYRND 551
Score = 34.3 bits (77), Expect = 1.4
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Frame = -1
Query: 478 DLGGY---GGASESYGAYGAGAAAGGGSSAAG--AYQGGYDASLAGGYGGASG-----GS 329
D G Y GG +SY +YG + G G + G Y D+S YGG SG
Sbjct: 3 DSGSYSQSGGEQQSYSSYGNQGSQGYGQTPQGYSGYGQTTDSSYGQNYGGYSGYGQNQSG 62
Query: 328 FYGSRGGYGAGRYHPYGR 275
+ S G Y + YG+
Sbjct: 63 YSQSYGSYENQKQSSYGQ 80
Score = 33.9 bits (76), Expect = 1.8
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Frame = -1
Query: 634 SSAAYAGRSGAYGGYGSEFGG----YGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGG 467
+ ++Y G Y GYG G YG Y G S G+ S GG
Sbjct: 42 TDSSYGQNYGGYSGYGQNQSGYSQSYGSYENQKQSSYGQQSYNNQGQQNTESS-----GG 96
Query: 466 YGGASESYGAYGAGAA-AGGGSSAAGAYQGGYD 371
GG + SYG G + S +QG YD
Sbjct: 97 QGGRAPSYGQSDYGQQDSYDQQSGYDQHQGSYD 129
>ref|NP_497637.1| Predicted CDS, putative protein, nematode specific [Caenorhabditis
elegans] gi|7508036|pir||T15126 hypothetical protein
T20B6.3 - Caenorhabditis elegans
gi|1946988|gb|AAB52890.1| Hypothetical protein T20B6.3
[Caenorhabditis elegans]
Length = 259
Score = 84.3 bits (207), Expect = 1e-15
Identities = 52/113 (46%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = -1
Query: 607 GAYGGYGSEFGGYGGYAGA-MGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYG 431
G YGG G GGYGGY G G G P G YGG G D GGYGG G YG
Sbjct: 117 GGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYG 176
Query: 430 AGAAAG-GGSSAAGAYQGGYDASL-AGGYGGASGGSFYGSRGGYGAGRYHPYG 278
G G GG G GGY + GGYGG GG G GG G G Y P G
Sbjct: 177 GGGDGGYGGGGFGGGGMGGYGGGMGGGGYGG--GGMGGGGYGGGGDGGYGPSG 227
Score = 78.6 bits (192), Expect = 6e-14
Identities = 50/114 (43%), Positives = 53/114 (45%), Gaps = 5/114 (4%)
Frame = -1
Query: 622 YAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGR-YGGSFSRGYDLGGYGGASES 446
Y G G GGYG GGYGG G G + G G G YGG GY GG+GG
Sbjct: 137 YGGMGGGPGGYG--MGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMG 194
Query: 445 -YGAYGAGAAAGGGSSAAGAYQGGYDASL--AGGYGGASG-GSFYGSRGGYGAG 296
YG G GGG G Y GG D +GGYGG G G YG GG G G
Sbjct: 195 GYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGGG 248
Score = 73.6 bits (179), Expect = 2e-12
Identities = 56/141 (39%), Positives = 63/141 (43%), Gaps = 25/141 (17%)
Frame = -1
Query: 625 AYAGRSGAYG----GYGSEF------GGY--GGYAG---AMGPYRGDPSLGFAGRYGGSF 491
A+ G +G YG G G +F GGY GGY G G Y G G+ G GG
Sbjct: 86 AFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGG-- 143
Query: 490 SRGYDLGGY---GGASESYGAYGAGAAAGG--GSSAAGAY-QGGYDASLAGGYGGASGGS 329
GY +GGY GG +G YG G GG G G Y GG+ GGYGG GG
Sbjct: 144 PGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGG 203
Query: 328 FYG----SRGGYGAGRYHPYG 278
YG GGYG G YG
Sbjct: 204 GYGGGGMGGGGYGGGGDGGYG 224
Score = 73.2 bits (178), Expect = 3e-12
Identities = 50/113 (44%), Positives = 52/113 (45%), Gaps = 9/113 (7%)
Frame = -1
Query: 607 GAYGGYGSEFGGYG--GYAGA------MGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGAS 452
G YGG G GGYG GY G G Y G G G YGG GY GG+GG
Sbjct: 135 GGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGG--GGYGGGGDGGYGGGGFGGG- 191
Query: 451 ESYGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASG-GSFYGSRGGYGAG 296
G YG G GGG G GGY GGYG + G G YG GGYG G
Sbjct: 192 -GMGGYG-GGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMG 242
Score = 72.4 bits (176), Expect = 5e-12
Identities = 49/123 (39%), Positives = 56/123 (44%), Gaps = 8/123 (6%)
Frame = -1
Query: 622 YAGRSGAYG--GYGSEFGG-YGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGAS 452
+A +G+YG GYG GG +GG+ G G F G GG GY GGYGG
Sbjct: 67 FAAMTGSYGRGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGG---GYGGGGYGGGG 123
Query: 451 ES---YGAYGAGAAAGGGSSAAGAYQGGYDASLAGG--YGGASGGSFYGSRGGYGAGRYH 287
+ YG YG G G G G GGY GG +GG GG G GGYG G
Sbjct: 124 DGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGG--GGYGGGGDG 181
Query: 286 PYG 278
YG
Sbjct: 182 GYG 184
Score = 67.8 bits (164), Expect = 1e-10
Identities = 46/108 (42%), Positives = 48/108 (43%)
Frame = -1
Query: 616 GRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGA 437
G G YGG G GGYGG G G Y G GF G G + G GGYGG G
Sbjct: 160 GDFGGYGGGGMGGGGYGG--GGDGGYGGG---GFGGGGMGGYGGGMGGGGYGGGGMGGGG 214
Query: 436 YGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGR 293
YG G G G S G Y GGY GGYG GG G G G+
Sbjct: 215 YGGGGDGGYGPS--GGYGGGYGP--GGGYGMGGGGGGGGCPNGECRGK 258
Score = 55.1 bits (131), Expect = 8e-07
Identities = 37/96 (38%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = -1
Query: 556 GAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESY--GAYGA----GAAAGGGSSAA 395
G GP+ G YGGS G +GG + Y G YG G GGG
Sbjct: 62 GQRGPFAAMTGSYGRGGYGGSGG-----GAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGG 116
Query: 394 GAYQGGYDASLA-GGYGGASGGSFYGSRGGYGAGRY 290
G Y GG D GGYGG G G GGYG G Y
Sbjct: 117 GGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGY 152
Score = 40.4 bits (93), Expect = 0.020
Identities = 30/81 (37%), Positives = 31/81 (38%)
Frame = -1
Query: 622 YAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESY 443
Y G G G G GG GGY G G G YG S GGYGG
Sbjct: 196 YGGGMGGGGYGGGGMGG-GGYGG-----------GGDGGYGPS-------GGYGGGYGPG 236
Query: 442 GAYGAGAAAGGGSSAAGAYQG 380
G YG G GGG G +G
Sbjct: 237 GGYGMGGGGGGGGCPNGECRG 257
>ref|NP_741525.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|16950486|gb|AAL32248.1|AC024790_7 Hypothetical
protein Y47D7A.15 [Caenorhabditis elegans]
Length = 435
Score = 82.4 bits (202), Expect = 4e-15
Identities = 51/108 (47%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Frame = -1
Query: 616 GRSGAYGGY-GSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYG 440
G G+ GGY G+E GG+GG G G Y G GF G GGS GGY GA +
Sbjct: 107 GFGGSQGGYAGAEQGGFGGSQGGAGGYAGAGQGGFGGAQGGS-------GGYAGAGQG-- 157
Query: 439 AYGAGAAAGGGSSAAGAYQGGYDASL--AGGYGGASGGSFYGSRGGYG 302
G G A GG AGA QGGY S AGGY GA G F G++GG G
Sbjct: 158 --GFGGAQGGSGGYAGAGQGGYGGSQGGAGGYAGAGQGGFGGAQGGSG 203
Score = 78.2 bits (191), Expect = 8e-14
Identities = 51/113 (45%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = -1
Query: 622 YAGRSGAYGGY-GSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES 446
Y G G GGY G+ GG+GG G G Y G GF G GG+ GGY GA +
Sbjct: 177 YGGSQGGAGGYAGAGQGGFGGAQGGSGGYAGAGQGGFGGSQGGA-------GGYAGAGQG 229
Query: 445 YGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGS-FYGSRGGYGAGRY 290
GA G G + GG AGA QGG AGG+GGA GGS Y G GAG +
Sbjct: 230 -GAGGFGGSQGGAGGYAGAGQGG-----AGGFGGAQGGSGGYAGAGQGGAGGF 276
Score = 77.0 bits (188), Expect = 2e-13
Identities = 54/114 (47%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Frame = -1
Query: 625 AYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES 446
A AG+ GA GG+G GG GGYAGA G GF G GGS GGY GA +
Sbjct: 224 AGAGQGGA-GGFGGSQGGAGGYAGAGQGGAG----GFGGAQGGS-------GGYAGAGQG 271
Query: 445 YGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGS---FYGSRGGYGAGR 293
GA G G + GG AGA QGG AGG+GGA GGS GS+GG+G +
Sbjct: 272 -GAGGFGGSQGGAGGYAGAGQGG-----AGGFGGAQGGSGGYAGGSQGGFGGSQ 319
Score = 75.1 bits (183), Expect = 7e-13
Identities = 46/101 (45%), Positives = 57/101 (55%), Gaps = 2/101 (1%)
Frame = -1
Query: 598 GGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAA 419
GGYG GGYGG AG G Y+ P++G G YGG+ G GGY GA + G G +
Sbjct: 77 GGYG---GGYGGGAG--GAYQAAPAIG-GGGYGGAGGFGGSQGGYAGAEQG----GFGGS 126
Query: 418 AGGGSSAAGAYQGGYDASL--AGGYGGASGGSFYGSRGGYG 302
GG AGA QGG+ + +GGY GA G F G++GG G
Sbjct: 127 QGGAGGYAGAGQGGFGGAQGGSGGYAGAGQGGFGGAQGGSG 167
Score = 74.7 bits (182), Expect = 9e-13
Identities = 52/116 (44%), Positives = 56/116 (47%), Gaps = 6/116 (5%)
Frame = -1
Query: 622 YAGRSGAYGGY-GSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES 446
+ G G GGY G+ GGYGG G G Y G GF G GGS GY G GG S
Sbjct: 159 FGGAQGGSGGYAGAGQGGYGGSQGGAGGYAGAGQGGFGGAQGGS--GGYAGAGQGGFGGS 216
Query: 445 YGAYGAGAAAGGGSSAAGAY---QGGYDASLAGGYGGASG-GSFYGSRGGY-GAGR 293
G GAG AG G AG + QGG G GGA G G G GGY GAG+
Sbjct: 217 QG--GAGGYAGAGQGGAGGFGGSQGGAGGYAGAGQGGAGGFGGAQGGSGGYAGAGQ 270
Score = 73.6 bits (179), Expect = 2e-12
Identities = 51/111 (45%), Positives = 58/111 (51%), Gaps = 2/111 (1%)
Frame = -1
Query: 625 AYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES 446
A AG+ GA GG+G GG GGYAGA G GF G GG+ GGY GA +
Sbjct: 245 AGAGQGGA-GGFGGAQGGSGGYAGAGQGGAG----GFGGSQGGA-------GGYAGAGQG 292
Query: 445 YGAYGAGAAAGGGSSAAGAYQGGYDASL--AGGYGGASGGSFYGSRGGYGA 299
GA G G A GG AG QGG+ S AGG+GGA GG+ Y G A
Sbjct: 293 -GAGGFGGAQGGSGGYAGGSQGGFGGSQGGAGGFGGAQGGAGYQQGPGPAA 342
Score = 72.8 bits (177), Expect = 4e-12
Identities = 50/113 (44%), Positives = 59/113 (51%), Gaps = 2/113 (1%)
Frame = -1
Query: 622 YAGRSGAYGGY-GSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASES 446
+ G G GGY G+ GG+GG G G Y G G AG +GGS GGY GA +
Sbjct: 195 FGGAQGGSGGYAGAGQGGFGGSQGGAGGYAG-AGQGGAGGFGGSQGGA---GGYAGAGQG 250
Query: 445 YGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGS-FYGSRGGYGAGRY 290
GA G G A GG AGA QGG AGG+GG+ GG+ Y G GAG +
Sbjct: 251 -GAGGFGGAQGGSGGYAGAGQGG-----AGGFGGSQGGAGGYAGAGQGGAGGF 297
Score = 71.6 bits (174), Expect = 8e-12
Identities = 53/122 (43%), Positives = 61/122 (49%), Gaps = 8/122 (6%)
Frame = -1
Query: 631 SAAYAGRSGAYGGYGSEFGGYGGYAGA-MGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGA 455
S YAG GG+G GG GGYAGA G Y G S G AG Y G+ GG+GGA
Sbjct: 148 SGGYAG--AGQGGFGGAQGGSGGYAGAGQGGYGG--SQGGAGGYAGA-----GQGGFGGA 198
Query: 454 SESYGAY------GAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGS-FYGSRGGYGAG 296
G Y G G + GG AGA QGG AGG+GG+ GG+ Y G GAG
Sbjct: 199 QGGSGGYAGAGQGGFGGSQGGAGGYAGAGQGG-----AGGFGGSQGGAGGYAGAGQGGAG 253
Query: 295 RY 290
+
Sbjct: 254 GF 255
Score = 70.5 bits (171), Expect = 2e-11
Identities = 50/120 (41%), Positives = 57/120 (46%), Gaps = 9/120 (7%)
Frame = -1
Query: 634 SSAAYAGRSGAYGG----YGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGG 467
+ A G GA GG G+ GG+GG G G Y G G+ G GG+ GG
Sbjct: 134 AGAGQGGFGGAQGGSGGYAGAGQGGFGGAQGGSGGYAGAGQGGYGGSQGGA-------GG 186
Query: 466 YGGASESYGAYGAGAAAGGGSSAAGAYQGGYDASL--AGGYGGA---SGGSFYGSRGGYG 302
Y GA G G G A GG AGA QGG+ S AGGY GA G F GS+GG G
Sbjct: 187 YAGA----GQGGFGGAQGGSGGYAGAGQGGFGGSQGGAGGYAGAGQGGAGGFGGSQGGAG 242
Score = 61.6 bits (148), Expect = 8e-09
Identities = 49/114 (42%), Positives = 54/114 (46%), Gaps = 15/114 (13%)
Frame = -1
Query: 598 GGYGSEFGGYGGYAGAMG-------PYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYG 440
GG G GG GGYA A P P G YGG GY GG GGA ++
Sbjct: 41 GGCGGGGGGGGGYAVAPAAAAYAPPPPPPPPPAPIGGGYGG----GYG-GGAGGAYQAAP 95
Query: 439 AYGAGAAAG----GGSSA--AGAYQGGYDASL--AGGYGGASGGSFYGSRGGYG 302
A G G G GGS AGA QGG+ S AGGY GA G F G++GG G
Sbjct: 96 AIGGGGYGGAGGFGGSQGGYAGAEQGGFGGSQGGAGGYAGAGQGGFGGAQGGSG 149
Score = 48.9 bits (115), Expect = 6e-05
Identities = 39/102 (38%), Positives = 44/102 (42%), Gaps = 16/102 (15%)
Frame = -1
Query: 631 SAAYAGRS-GAYGGYGSEFGGYGGYAGA--------------MGPYRGDPSLGFAGRYGG 497
S YAG G GG+G GG GGYAGA G Y G GF G GG
Sbjct: 262 SGGYAGAGQGGAGGFGGSQGGAGGYAGAGQGGAGGFGGAQGGSGGYAGGSQGGFGGSQGG 321
Query: 496 SFSRGYDLGGYGGASESYGAYGAGAAAGGGSSA-AGAYQGGY 374
+ GG+GGA GAG G G +A +G Q GY
Sbjct: 322 A-------GGFGGAQG-----GAGYQQGPGPAAVSGGGQQGY 351
Score = 37.4 bits (85), Expect = 0.17
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 32/103 (31%)
Frame = -1
Query: 505 YGGSFSRGYDLGGYGGASESYGAYGAGAAAGGGSSAAGAYQGGYDASLA----------- 359
+G S + + L G GG G A GGG G GGY + A
Sbjct: 10 FGCSNAFLFSLLGLGGGGGGGGCCAPKPACGGGCGGGGGGGGGYAVAPAAAAYAPPPPPP 69
Query: 358 -----------GGYGGASGGSF----------YGSRGGYGAGR 293
GGYGG +GG++ YG GG+G +
Sbjct: 70 PPPAPIGGGYGGGYGGGAGGAYQAAPAIGGGGYGGAGGFGGSQ 112
>ref|NP_631961.1| TBP-associated factor 15 isoform 1; TAF15 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 68 kD; TATA
box-binding protein-associated factor 2N (RNA-binding
protein 56); TATA box binding protein (TBP)-associated
factor, RNA polymerase II, N, 68kD (RNA-binding protein
56); RBP56/CSMF fusion gene; RNA-binding protein 56
[Homo sapiens] gi|8928305|sp|Q92804|RB56_HUMAN
TATA-binding protein associated factor 2N (RNA-binding
protein 56) (TAFII68) (TAF(II)68)
gi|1613775|gb|AAC50932.1| putative RNA binding protein
RBP56 gi|3763906|dbj|BAA33811.1| alternative splicing
[Homo sapiens]
Length = 592
Score = 82.0 bits (201), Expect = 6e-15
Identities = 55/126 (43%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Frame = -1
Query: 634 SSAAYAG-RSGAYGG-----YGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGG----SFSR 485
S Y G R G YGG YG + GG GY G G Y GD G+ G GG
Sbjct: 451 SGGGYGGDRGGGYGGDRGGGYGGDRGG--GYGGDRGGYGGDRGGGYGGDRGGYGGDRGGY 508
Query: 484 GYDLGGYGGASESYGA----YGAGAAAGGGSSAAGAYQGGYDASLA-GGYGGASGGSFYG 320
G D GGYGG YG G G GGGS G GGY + GGYGG GG + G
Sbjct: 509 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG 568
Query: 319 SRGGYG 302
RGGYG
Sbjct: 569 DRGGYG 574
Score = 78.2 bits (191), Expect = 8e-14
Identities = 51/113 (45%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Frame = -1
Query: 616 GRSGAYGGYGSEF--GGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESY 443
GR G GGYG + GGYGG + G Y GD S G YGG S GGYGG +
Sbjct: 410 GRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRS---GGGYGGDRSG----GGYGG--DRG 460
Query: 442 GAYGAGAAAGGGSSAAGAY---QGGYDASLAGGYGGASGGSFYGSRGGYGAGR 293
G YG G G G Y +GGY GGYGG GG + G RGGYG R
Sbjct: 461 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDR 512
Score = 76.6 bits (187), Expect = 2e-13
Identities = 50/108 (46%), Positives = 52/108 (47%), Gaps = 2/108 (1%)
Frame = -1
Query: 595 GYGSEFG--GYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGA 422
GYG E G G GG G G Y GD S G YGG S G GGY G S G YG
Sbjct: 398 GYGGERGYRGRGGRGGDRGGYGGDRS---GGGYGGDRSSG---GGYSG-DRSGGGYGGDR 450
Query: 421 AAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGRYHPYG 278
+ GG G GGY GGYGG GG + G RGGYG R YG
Sbjct: 451 SGGGYGGDRG---GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYG 495
Score = 70.9 bits (172), Expect = 1e-11
Identities = 47/110 (42%), Positives = 51/110 (45%), Gaps = 5/110 (4%)
Frame = -1
Query: 622 YAGRSGAYGG-----YGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGG 458
Y G G YGG YG + GGYGG G G RG G G YGG SRG GYGG
Sbjct: 479 YGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG-GDRGGYGGDRSRG----GYGG 533
Query: 457 ASESYGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYGSRGG 308
YG + G G +G GGY GGYGG GG + G GG
Sbjct: 534 DRGGGSGYGGDRSGGYGGDRSG---GGYGGDRGGGYGGDRGG-YGGKMGG 579
Score = 70.1 bits (170), Expect = 2e-11
Identities = 50/119 (42%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Frame = -1
Query: 634 SSAAYAGRSGAYGGYGSEFGGYGGYAG--AMGPYRGDPSLGFAGRYGGSFSRGYDLGGYG 461
S Y G + GGY + G GGY G + G Y GD G+ G GG + G GGYG
Sbjct: 423 SGGGYGGDRSSGGGYSGDRSG-GGYGGDRSGGGYGGDRGGGYGGDRGGGYG-GDRGGGYG 480
Query: 460 GASESYGAYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYG---SRGGYGAGR 293
G YG G GG G +GGY GGYGG GG YG SRGGYG R
Sbjct: 481 GDRGGYGG-DRGGGYGGDRGGYGGDRGGYGGD-RGGYGGDRGG--YGGDRSRGGYGGDR 535
Score = 62.0 bits (149), Expect = 6e-09
Identities = 42/94 (44%), Positives = 47/94 (49%), Gaps = 9/94 (9%)
Frame = -1
Query: 547 GPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAAGGGSS---AAGAYQG- 380
G +RG G G Y G RG D GGYGG S G YG ++GGG S + G Y G
Sbjct: 392 GDFRGRGYGGERG-YRGRGGRGGDRGGYGG-DRSGGGYGGDRSSGGGYSGDRSGGGYGGD 449
Query: 379 ----GYDASLAGGYGGASGGSFYGSR-GGYGAGR 293
GY GGYGG GG + G R GGYG R
Sbjct: 450 RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDR 483
Score = 55.8 bits (133), Expect = 5e-07
Identities = 57/152 (37%), Positives = 60/152 (38%), Gaps = 40/152 (26%)
Frame = -1
Query: 613 RSGAYGGYGSEFGGYGGYAGAMG----PYRGD-----PSLG------------------- 518
R G GG GGY G G G P GD PS G
Sbjct: 326 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 385
Query: 517 --------FAGR-YGGSFSRGY-DLGGYGGASESYGAYGAGAAAGGGSSAAGAYQGGYDA 368
F GR YGG RGY GG GG YG +G GG S+ G Y G D
Sbjct: 386 DSRPSGGDFRGRGYGGE--RGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSG--DR 441
Query: 367 SLAGGYGG-ASGGSFYGSRGG-YGAGRYHPYG 278
S GGYGG SGG + G RGG YG R YG
Sbjct: 442 S-GGGYGGDRSGGGYGGDRGGGYGGDRGGGYG 472
Score = 35.8 bits (81), Expect = 0.48
Identities = 17/35 (48%), Positives = 18/35 (50%)
Frame = -1
Query: 634 SSAAYAGRSGAYGGYGSEFGGYGGYAGAMGPYRGD 530
S Y G G GGYG + GGYGG G YR D
Sbjct: 554 SGGGYGGDRG--GGYGGDRGGYGGKMGGRNDYRND 586
Score = 34.3 bits (77), Expect = 1.4
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Frame = -1
Query: 634 SSAAYAGRSGAYG----GYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGG 467
SS + GR+ +Y G + GY G Y D + ++ S+S+
Sbjct: 94 SSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSY--DEQSNYDQQHD-SYSQNQQ--S 148
Query: 466 YGGASESYG-----------AYGAGAAAGGGSSAAGAYQGGYDASLAGGYGGASGGSFYG 320
Y E+Y YG GGS G +GGYD G G+SG G
Sbjct: 149 YHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSG----G 204
Query: 319 SRGGY-GAGRYHPYG 278
RGG+ G + YG
Sbjct: 205 DRGGFKNFGGHRDYG 219
Score = 33.9 bits (76), Expect = 1.8
Identities = 29/104 (27%), Positives = 39/104 (36%)
Frame = -1
Query: 586 SEFGGYGGYAGAMGPYRGDPSLGFAGRYGGSFSRGYDLGGYGGASESYGAYGAGAAAGGG 407
S+ G YG G Y YG S+GY G AS+SY YG + G
Sbjct: 2 SDSGSYGQSGGEQQSY---------STYGNPGSQGY-----GQASQSYSGYGQTTDSSYG 47
Query: 406 SSAAGAYQGGYDASLAGGYGGASGGSFYGSRGGYGAGRYHPYGR 275
+ +G G S GY + GG + Y Y+ G+
Sbjct: 48 QNYSGYSSYGQSQS---GYSQSYGGYENQKQSSYSQQPYNNQGQ 88
Score = 33.9 bits (76), Expect = 1.8
Identities = 23/45 (51%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 628 AAYAG-RSGAYGGYGSEFGGYGGYAGAMGPYRGDPSLGFAGRYGG 497
+ Y G RSG YGG S GGYGG G G Y GD G+ G+ GG
Sbjct: 539 SGYGGDRSGGYGGDRSG-GGYGGDRG--GGYGGDRG-GYGGKMGG 579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,925,302
Number of Sequences: 1393205
Number of extensions: 17652751
Number of successful extensions: 318001
Number of sequences better than 10.0: 7704
Number of HSP's better than 10.0 without gapping: 82068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174696
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
