Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002093A_C02 KMC002093A_c02
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB60393.1| proto-oncogene tyrosine-protein kinase [Homo sapi... 33 2.6
gb|AAO32388.1| FKS3 [Saccharomyces bayanus] 32 4.4
ref|NP_701443.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.4
gb|AAB60449.1| c-abl protein, type IV [Mus musculus] 32 5.7
gb|AAA37138.1| c-abl-protein type IV 32 5.7
>gb|AAB60393.1| proto-oncogene tyrosine-protein kinase [Homo sapiens]
Length = 1149
Score = 33.1 bits (74), Expect = 2.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -2
Query: 478 PGKATDSLTKASLD------DSGKQENSRPSGGKLHSLVKISVIKKPMASDVKSDAEPGG 317
PGK + SL +GK+E+SR G + V+ +++P+ASD EP G
Sbjct: 5 PGKVLGDQRRPSLPALHFIKGAGKKESSRHGGPHCNVFVEHEALQRPVASDF----EPQG 60
Query: 316 LQSLCQYGSDED 281
L ++ S E+
Sbjct: 61 LSEAARWNSKEN 72
>gb|AAO32388.1| FKS3 [Saccharomyces bayanus]
Length = 671
Score = 32.3 bits (72), Expect = 4.4
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 328 LHHSLHQRPSVS**LKSSPMNEAFRHWDVNFLVCLN-HPNWLLSENQLLCLEDLQKLFAS 504
LH QR + + E R W+ N +N HP L++ QL ED L S
Sbjct: 33 LHGKARQRNVKMAKKRGVSIKEQIRQWNENEQEFINNHPKITLTQEQL---EDQTNL-KS 88
Query: 505 LDYNWMFHHVHLKPEQIL 558
DY W +L PEQ++
Sbjct: 89 ADYKWKLKMKNLSPEQMI 106
>ref|NP_701443.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496610|gb|AAN36167.1|AE014845_22 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 968
Score = 32.3 bits (72), Expect = 4.4
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -2
Query: 565 SDEEFAQVSDVHGETSNYNPKRQKVSEDLPGKATDSLTKASLDDSGKQENSRPSGGKLHS 386
S+EE + SD + + +K E+ K+ D S D+S + + + +
Sbjct: 668 SEEESEEKSDEGSDGESEEKNDEKSKEESDNKSDDESDNESDDESDNESDDESDDKRDNK 727
Query: 385 LVKISVIKKPMASDVKSDAE 326
S +K + SDVKSD E
Sbjct: 728 CDDKSDVKSDVKSDVKSDNE 747
>gb|AAB60449.1| c-abl protein, type IV [Mus musculus]
Length = 206
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -2
Query: 478 PGKATDSLTKASLD------DSGKQENSRPSGGKLHSLVKISVIKKPMASDVKSDAEPGG 317
PGK + SL +GK+++SR G + V+ +++P+ASD EP G
Sbjct: 5 PGKVLGDQRRPSLPALHFIKGAGKRDSSRHGGPHCNVFVEHEALQRPVASDF----EPQG 60
Query: 316 LQSLCQYGSDED 281
L ++ S E+
Sbjct: 61 LSEAARWNSKEN 72
>gb|AAA37138.1| c-abl-protein type IV
Length = 138
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = -2
Query: 478 PGKATDSLTKASLD------DSGKQENSRPSGGKLHSLVKISVIKKPMASDVKSDAEPGG 317
PGK + SL +GK+++SR G + V+ +++P+ASD EP G
Sbjct: 5 PGKVLGDQRRPSLPALHFIKGAGKRDSSRHGGPHCNVFVEHEALQRPVASDF----EPQG 60
Query: 316 LQSLCQYGSDED 281
L ++ S E+
Sbjct: 61 LSEAARWNSKEN 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,621,123
Number of Sequences: 1393205
Number of extensions: 9343877
Number of successful extensions: 23012
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23000
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
