Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002092A_C01 KMC002092A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana] g... 112 3e-24
ref|NP_190848.1| zinc finger - like protein; protein id: At3g528... 112 3e-24
ref|NP_180326.1| putative zinc finger protein; protein id: At2g2... 108 3e-23
ref|NP_565844.1| expressed protein; protein id: At2g36320.1, sup... 107 6e-23
ref|NP_192941.1| putative protein; protein id: At4g12040.1, supp... 105 3e-22
>gb|AAK68811.1| zinc finger-like protein [Arabidopsis thaliana]
gi|18377546|gb|AAL66939.1| zinc finger-like protein
[Arabidopsis thaliana]
Length = 169
Score = 112 bits (279), Expect = 3e-24
Identities = 59/119 (49%), Positives = 74/119 (61%), Gaps = 20/119 (16%)
Frame = -3
Query: 514 STVAASAAASMPPA----VESVPLPPALTSPE-----------IASPAA-----QVTNRC 395
STV +S + S P + + S +PP L +P I+ P Q NRC
Sbjct: 51 STVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRC 110
Query: 394 GTCRKRVGLTGFRCRCEATFCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI 218
TCRKRVGLTGF+CRC FCG HRYPE HGC +DFK+ GREEIA+ANP+V+A KL++I
Sbjct: 111 TTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 169
>ref|NP_190848.1| zinc finger - like protein; protein id: At3g52800.1, supported by
cDNA: gi_14596166 [Arabidopsis thaliana]
gi|11358932|pir||T49033 zinc finger-like protein -
Arabidopsis thaliana gi|7669954|emb|CAB89241.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 170
Score = 112 bits (279), Expect = 3e-24
Identities = 59/119 (49%), Positives = 74/119 (61%), Gaps = 20/119 (16%)
Frame = -3
Query: 514 STVAASAAASMPPA----VESVPLPPALTSPE-----------IASPAA-----QVTNRC 395
STV +S + S P + + S +PP L +P I+ P Q NRC
Sbjct: 52 STVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRC 111
Query: 394 GTCRKRVGLTGFRCRCEATFCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI 218
TCRKRVGLTGF+CRC FCG HRYPE HGC +DFK+ GREEIA+ANP+V+A KL++I
Sbjct: 112 TTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170
>ref|NP_180326.1| putative zinc finger protein; protein id: At2g27580.1, supported by
cDNA: 14203., supported by cDNA: gi_18253038
[Arabidopsis thaliana] gi|25407907|pir||D84674
hypothetical protein At2g27580 [imported] - Arabidopsis
thaliana gi|3860274|gb|AAC73042.1| putative zinc finger
protein [Arabidopsis thaliana]
gi|18253039|gb|AAL62446.1| putative zinc finger protein
[Arabidopsis thaliana] gi|20197663|gb|AAM15188.1|
putative zinc finger protein [Arabidopsis thaliana]
gi|21553397|gb|AAM62490.1| putative zinc finger protein
[Arabidopsis thaliana] gi|23198266|gb|AAN15660.1|
putative zinc finger protein [Arabidopsis thaliana]
Length = 163
Score = 108 bits (271), Expect = 3e-23
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 10/111 (9%)
Frame = -3
Query: 520 ALSTVAASAAASM-----PPA-----VESVPLPPALTSPEIASPAAQVTNRCGTCRKRVG 371
+L+ V A+A++S+ PPA VE+ A PE A Q RC TCR+RVG
Sbjct: 53 SLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVG 112
Query: 370 LTGFRCRCEATFCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI 218
+TGFRCRC FCG HRY E+H C FDFK +G+++IA+ANP+V+ADKL +I
Sbjct: 113 ITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163
>ref|NP_565844.1| expressed protein; protein id: At2g36320.1, supported by cDNA:
24255. [Arabidopsis thaliana] gi|25408460|pir||C84779
hypothetical protein At2g36320 [imported] - Arabidopsis
thaliana gi|4510345|gb|AAD21434.1| expressed protein
[Arabidopsis thaliana] gi|21592464|gb|AAM64415.1| zinc
finger-like protein [Arabidopsis thaliana]
Length = 161
Score = 107 bits (268), Expect = 6e-23
Identities = 53/94 (56%), Positives = 63/94 (66%)
Frame = -3
Query: 499 SAAASMPPAVESVPLPPALTSPEIASPAAQVTNRCGTCRKRVGLTGFRCRCEATFCGAHR 320
+A +P ++ P E SP Q NRC CRKRVGLTGF CRC TFCG+HR
Sbjct: 69 AAELEIPTTKKTEEKKPIQIPTEQPSPP-QRPNRCTVCRKRVGLTGFMCRCGTTFCGSHR 127
Query: 319 YPEKHGCGFDFKAVGREEIARANPVVRADKLRRI 218
YPE HGC FDFK+ GREEIA+ANP+V A KL++I
Sbjct: 128 YPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>ref|NP_192941.1| putative protein; protein id: At4g12040.1, supported by cDNA: 45.,
supported by cDNA: gi_13605498 [Arabidopsis thaliana]
gi|7485567|pir||T06611 hypothetical protein F16J13.110 -
Arabidopsis thaliana gi|4586109|emb|CAB40945.1| putative
protein [Arabidopsis thaliana]
gi|7267905|emb|CAB78247.1| putative protein [Arabidopsis
thaliana] gi|13272445|gb|AAK17161.1|AF325093_1 putative
protein [Arabidopsis thaliana]
gi|13605499|gb|AAK32743.1|AF361575_1
AT4g12040/F16J13_110 [Arabidopsis thaliana]
gi|19548019|gb|AAL87373.1| AT4g12040/F16J13_110
[Arabidopsis thaliana] gi|21593800|gb|AAM65767.1|
unknown [Arabidopsis thaliana]
Length = 175
Score = 105 bits (262), Expect = 3e-22
Identities = 51/100 (51%), Positives = 68/100 (68%)
Frame = -3
Query: 517 LSTVAASAAASMPPAVESVPLPPALTSPEIASPAAQVTNRCGTCRKRVGLTGFRCRCEAT 338
L TV +A S SVP+ E + P + NRC +C K+VG+ GF+C+C +T
Sbjct: 83 LETVVVTAEPS------SVPVAAEQDEAEPSRPV-RPNNRCFSCNKKVGVMGFKCKCGST 135
Query: 337 FCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI 218
FCG+HRYPEKH C FDFK VGR+ IA+ANP+V+ADK++RI
Sbjct: 136 FCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,626,346
Number of Sequences: 1393205
Number of extensions: 11393289
Number of successful extensions: 75097
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 50089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71691
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
