Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002091A_C01 KMC002091A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13849.2| unknown protein [Arabidopsis thaliana] 69 1e-20
ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabi... 69 1e-20
gb|AAK69274.1| unknown [Glycine max] 99 3e-20
dbj|BAB62605.1| B1153F04.12 [Oryza sativa (japonica cultivar-gro... 60 3e-13
ref|NP_564136.1| expressed protein; protein id: At1g21200.1, sup... 54 7e-10
>gb|AAM13849.2| unknown protein [Arabidopsis thaliana]
Length = 431
Score = 68.6 bits (166), Expect(2) = 1e-20
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -3
Query: 295 ELEKPRLKWARFSSQKEREMERHQLENERSRLEIERMILLLRHQELELMNIQ 140
E+EK R+KW R+ S+KEREME+ +L+N+R RLE ERMIL+LR E+EL +Q
Sbjct: 367 EMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRRSEIELNELQ 418
Score = 52.0 bits (123), Expect(2) = 1e-20
Identities = 20/56 (35%), Positives = 39/56 (68%)
Frame = -2
Query: 440 SQVMXQLSSEVSGVLQDGGKSAWEKKQWMKKRMVQLDEQQVSYRAEAV*AGKAKVE 273
S + +L E + V++D GKS WEKK+W++++M++++E+++ Y E V K +V+
Sbjct: 319 STAVKRLREEAASVVEDVGKSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVK 374
>ref|NP_187615.1| unknown protein; protein id: At3g10040.1 [Arabidopsis thaliana]
gi|6143872|gb|AAF04419.1|AC010927_12 unknown protein
[Arabidopsis thaliana]
Length = 418
Score = 68.6 bits (166), Expect(2) = 1e-20
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = -3
Query: 295 ELEKPRLKWARFSSQKEREMERHQLENERSRLEIERMILLLRHQELELMNIQ 140
E+EK R+KW R+ S+KEREME+ +L+N+R RLE ERMIL+LR E+EL +Q
Sbjct: 354 EMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRRSEIELNELQ 405
Score = 52.0 bits (123), Expect(2) = 1e-20
Identities = 20/56 (35%), Positives = 39/56 (68%)
Frame = -2
Query: 440 SQVMXQLSSEVSGVLQDGGKSAWEKKQWMKKRMVQLDEQQVSYRAEAV*AGKAKVE 273
S + +L E + V++D GKS WEKK+W++++M++++E+++ Y E V K +V+
Sbjct: 306 STAVKRLREEAASVVEDVGKSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVK 361
>gb|AAK69274.1| unknown [Glycine max]
Length = 408
Score = 98.6 bits (244), Expect = 3e-20
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 10/98 (10%)
Frame = -3
Query: 394 KMGGRVLGRKSSG*RRGW--CSWMSNK*V--------IEPRPFELEKPRLKWARFSSQKE 245
++ G V G G + W WM + V + + FELEK RLKWARFSS+KE
Sbjct: 291 QLSGEVSGVLQDGGKSAWEKKQWMKKRVVQLEEQQVSYQMQAFELEKQRLKWARFSSKKE 350
Query: 244 REMERHQLENERSRLEIERMILLLRHQELELMNIQQQQ 131
REME+ +L+NER RLEIERM+LLLRH+ELEL+N+QQQQ
Sbjct: 351 REMEKDKLQNERRRLEIERMVLLLRHKELELVNVQQQQ 388
Score = 95.9 bits (237), Expect = 2e-19
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Frame = -2
Query: 485 NDVVRKRARKSG---VMPSQVMXQLSSEVSGVLQDGGKSAWEKKQWMKKRMVQLDEQQVS 315
NDV+R+RAR G V SQ+M QLS EVSGVLQDGGKSAWEKKQWMKKR+VQL+EQQVS
Sbjct: 268 NDVMRRRARNKGGFGVSSSQMMQQLSGEVSGVLQDGGKSAWEKKQWMKKRVVQLEEQQVS 327
Query: 314 YRAEAV*AGKAKVEMGK 264
Y+ +A K +++ +
Sbjct: 328 YQMQAFELEKQRLKWAR 344
>dbj|BAB62605.1| B1153F04.12 [Oryza sativa (japonica cultivar-group)]
gi|21104858|dbj|BAB93442.1| P0028G04.23 [Oryza sativa
(japonica cultivar-group)]
Length = 547
Score = 60.1 bits (144), Expect(2) = 3e-13
Identities = 27/52 (51%), Positives = 39/52 (74%)
Frame = -3
Query: 310 EPRPFELEKPRLKWARFSSQKEREMERHQLENERSRLEIERMILLLRHQELE 155
E R + LE+ RLKW RF + KER+MER +L N+R R++ RM+LLLR ++L+
Sbjct: 452 EVRAYHLERQRLKWERFRANKERDMERARLRNDRLRIDGRRMLLLLRQKDLD 503
Score = 35.4 bits (80), Expect(2) = 3e-13
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = -2
Query: 443 PSQVMXQLSSEVSGVLQDGGKSAWEKKQWMKKRMVQLDEQQVSYRAEA 300
PS V QL SE++ + GG + +QW+++R V+++EQQV++ A
Sbjct: 410 PSAVQ-QLQSELAAAVAGGGDPQ-QVRQWVRRRTVEVEEQQVAHEVRA 455
>ref|NP_564136.1| expressed protein; protein id: At1g21200.1, supported by cDNA:
gi_15027986, supported by cDNA: gi_20259202 [Arabidopsis
thaliana] gi|25372951|pir||C86345 hypothetical protein
F16F4.11 - Arabidopsis thaliana
gi|8920640|gb|AAF81362.1|AC036104_11 Contains weak
similarity to DNA-binding protein (GT-1a) from Nicotiana
tabacum gb|M93436. [Arabidopsis thaliana]
gi|15027987|gb|AAK76524.1| unknown protein [Arabidopsis
thaliana] gi|20259203|gb|AAM14317.1| unknown protein
[Arabidopsis thaliana]
Length = 443
Score = 53.9 bits (128), Expect(2) = 7e-10
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = -3
Query: 313 IEPRPFELEKPRLKWARFSSQKEREMERHQLENERSRLEIERMILLLRHQEL 158
I+ ELEK R +W RFS ++++E+ER ++ENER +LE +RM L L+ +EL
Sbjct: 388 IQVELLELEKQRFRWQRFSKKRDQELERMRMENERMKLENDRMGLELKQREL 439
Score = 30.4 bits (67), Expect(2) = 7e-10
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = -2
Query: 392 DGGKSAWEKKQWMKKRMVQLDEQQVSYRAE 303
+ G++ +KQWM+ R +QL+EQ++ + E
Sbjct: 362 ESGRAGSVQKQWMESRTLQLEEQKLQIQVE 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,583,218
Number of Sequences: 1393205
Number of extensions: 9959005
Number of successful extensions: 38451
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 34313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37959
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
