Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002090A_C01 KMC002090A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat prot... 71 2e-11
gb|AAM61607.1| unknown [Arabidopsis thaliana] 70 3e-11
ref|NP_680751.1| expressed protein; protein id: At4g30480.2, sup... 70 3e-11
ref|NP_650543.1| CG14894-PA [Drosophila melanogaster] gi|2317147... 49 7e-05
gb|EAA09638.1| agCP15508 [Anopheles gambiae str. PEST] 48 1e-04
>gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat protein [Oryza sativa]
Length = 548
Score = 70.9 bits (172), Expect = 2e-11
Identities = 32/38 (84%), Positives = 35/38 (91%)
Frame = -3
Query: 713 MIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVPF 600
MI KLK++GNSVLGRFGMSVDNFK VKDPNTGSYS+ F
Sbjct: 509 MIGKLKDLGNSVLGRFGMSVDNFKAVKDPNTGSYSISF 546
>gb|AAM61607.1| unknown [Arabidopsis thaliana]
Length = 277
Score = 70.1 bits (170), Expect = 3e-11
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -3
Query: 710 IAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVPF 600
I KLKEMGNS+LGRFGMSVDNFK VKDPNTGSYS+ F
Sbjct: 239 ITKLKEMGNSILGRFGMSVDNFKAVKDPNTGSYSLSF 275
>ref|NP_680751.1| expressed protein; protein id: At4g30480.2, supported by cDNA:
12573. [Arabidopsis thaliana] gi|25407646|pir||E85356
hypothetical protein AT4g30480 [imported] - Arabidopsis
thaliana gi|7269949|emb|CAB79766.1| putative protein
[Arabidopsis thaliana]
Length = 277
Score = 70.1 bits (170), Expect = 3e-11
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -3
Query: 710 IAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVPF 600
I KLKEMGNS+LGRFGMSVDNFK VKDPNTGSYS+ F
Sbjct: 239 ITKLKEMGNSILGRFGMSVDNFKAVKDPNTGSYSLSF 275
>ref|NP_650543.1| CG14894-PA [Drosophila melanogaster] gi|23171470|gb|AAF55314.2|
CG14894-PA [Drosophila melanogaster]
Length = 263
Score = 48.9 bits (115), Expect = 7e-05
Identities = 20/38 (52%), Positives = 29/38 (75%)
Frame = -3
Query: 713 MIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVPF 600
M++ LK++GN +L FG+S NF+ +DPNTGSYS+ F
Sbjct: 225 MMSSLKDLGNMILKPFGLSTQNFQMQQDPNTGSYSINF 262
>gb|EAA09638.1| agCP15508 [Anopheles gambiae str. PEST]
Length = 324
Score = 48.1 bits (113), Expect = 1e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -3
Query: 713 MIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVPF 600
M+ KLK++GN +L FG+S NF+ +DP TGSYS+ F
Sbjct: 281 MMGKLKDLGNMILRPFGLSTQNFEMKQDPQTGSYSINF 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,933,561
Number of Sequences: 1393205
Number of extensions: 12226759
Number of successful extensions: 30082
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30062
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
