Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002087A_C01 KMC002087A_c01
(387 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK27806.1|AC022457_9 putative protein kinase [Oryza sativa (... 49 1e-05
gb|AAK68748.1| Unknown protein [Arabidopsis thaliana] 49 2e-05
ref|NP_174809.1| leucine-rich repeat transmembrane protein kinas... 49 2e-05
pir||B85089 receptor protein kinase-like protein [imported] - Ar... 47 4e-05
gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] 47 4e-05
>gb|AAK27806.1|AC022457_9 putative protein kinase [Oryza sativa (japonica cultivar-group)]
Length = 1278
Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/29 (68%), Positives = 25/29 (85%)
Frame = +2
Query: 281 ELAYTLAVTEKCDVFSFGVLAFEILTGKH 367
E AYT+ VTEKCDV+SFGV+A E++ GKH
Sbjct: 1157 EFAYTMRVTEKCDVYSFGVVALEVMMGKH 1185
>gb|AAK68748.1| Unknown protein [Arabidopsis thaliana]
Length = 397
Score = 48.5 bits (114), Expect = 2e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +2
Query: 269 FCTTELAYTLAVTEKCDVFSFGVLAFEILTGKH 367
+ E AYT+ VTEKCDV+SFGVL E++ GKH
Sbjct: 299 YVAPEFAYTMKVTEKCDVYSFGVLILELIIGKH 331
>ref|NP_174809.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g35710.1 [Arabidopsis thaliana]
gi|25518391|pir||B86479 hypothetical protein F14D7.1 -
Arabidopsis thaliana gi|8778966|gb|AAF79881.1|AC021198_1
Contains similarity to receptor protein kinase-like
protein from Arabidopsis thaliana gb|AL161513. It
contains a eukaryotic protein kinase domain PF|00069.
EST gb|AI997574 comes from this gene
Length = 1120
Score = 48.5 bits (114), Expect = 2e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +2
Query: 269 FCTTELAYTLAVTEKCDVFSFGVLAFEILTGKH 367
+ E AYT+ VTEKCDV+SFGVL E++ GKH
Sbjct: 1022 YVAPEFAYTMKVTEKCDVYSFGVLILELIIGKH 1054
>pir||B85089 receptor protein kinase-like protein [imported] - Arabidopsis
thaliana gi|7267528|emb|CAB78010.1| receptor protein
kinase-like protein [Arabidopsis thaliana]
gi|7321074|emb|CAB82121.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
Length = 1027
Score = 47.4 bits (111), Expect = 4e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +2
Query: 269 FCTTELAYTLAVTEKCDVFSFGVLAFEILTGKH 367
+ ELAY + VTEKCDV+SFGVL E++ G+H
Sbjct: 928 YVAPELAYAMKVTEKCDVYSFGVLTLEVIKGEH 960
>gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana]
Length = 1045
Score = 47.4 bits (111), Expect = 4e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +2
Query: 269 FCTTELAYTLAVTEKCDVFSFGVLAFEILTGKH 367
+ ELAY + VTEKCDV+SFGVL E++ G+H
Sbjct: 946 YVAPELAYAMKVTEKCDVYSFGVLTLEVIKGEH 978
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,760,048
Number of Sequences: 1393205
Number of extensions: 5859691
Number of successful extensions: 17349
Number of sequences better than 10.0: 913
Number of HSP's better than 10.0 without gapping: 16848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17343
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
