Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002082A_C01 KMC002082A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 ... 143 2e-33
gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 ... 142 3e-33
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta subu... 139 4e-32
gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 ... 135 5e-31
ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subuni... 127 8e-29
>gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]
Length = 374
Score = 143 bits (360), Expect = 2e-33
Identities = 68/75 (90%), Positives = 73/75 (96%)
Frame = -1
Query: 603 VEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 424
VEEGFPQHG+GAEIC SV+EESF YLDAPVERIAGADVPMPYAANLERMAVPQV+DIVRA
Sbjct: 300 VEEGFPQHGIGAEICMSVVEESFAYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVRA 359
Query: 423 AKRACYRSVPLAAAA 379
AKRACYR+VP+AAAA
Sbjct: 360 AKRACYRAVPMAAAA 374
>gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 [Zea mays]
Length = 374
Score = 142 bits (358), Expect = 3e-33
Identities = 68/75 (90%), Positives = 73/75 (96%)
Frame = -1
Query: 603 VEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 424
VEEGFPQHG+GAEIC SV+EESF YLDAPVERIAGADVPMPYAANLERMAVPQV+DIVRA
Sbjct: 300 VEEGFPQHGIGAEICMSVVEESFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVRA 359
Query: 423 AKRACYRSVPLAAAA 379
AKRACYR+VP+AAAA
Sbjct: 360 AKRACYRAVPMAAAA 374
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) gi|7431574|pir||T06532 pyruvate
dehydrogenase (lipoamide) (EC 1.2.4.1) beta chain -
garden pea gi|1336097|gb|AAB01223.1| pyruvate
dehydrogenase E1beta
Length = 359
Score = 139 bits (349), Expect = 4e-32
Identities = 68/75 (90%), Positives = 70/75 (92%)
Frame = -1
Query: 603 VEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 424
VEEGFPQHGVGAEICTSVIEESFGYLDA VERI GADVPMPYA NLER+ VP VEDIVRA
Sbjct: 285 VEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRA 344
Query: 423 AKRACYRSVPLAAAA 379
AKRAC+RSVPLAAAA
Sbjct: 345 AKRACHRSVPLAAAA 359
>gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 [Zea mays]
Length = 373
Score = 135 bits (339), Expect = 5e-31
Identities = 66/76 (86%), Positives = 72/76 (93%), Gaps = 1/76 (1%)
Frame = -1
Query: 603 VEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 424
VEEGFPQHG+GAEIC SV+E+SF YLDAPVERIAGADVPMPYAANLERMAVPQV+DIVRA
Sbjct: 298 VEEGFPQHGIGAEICMSVVEDSFEYLDAPVERIAGADVPMPYAANLERMAVPQVDDIVRA 357
Query: 423 AKRACYR-SVPLAAAA 379
AKRACYR +VP+AA A
Sbjct: 358 AKRACYRAAVPMAATA 373
>ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) (sp Q38799); protein id:
At5g50850.1, supported by cDNA: gi_17979465, supported
by cDNA: gi_565064 [Arabidopsis thaliana]
gi|21431823|sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase
E1 component beta subunit, mitochondrial precursor
(PDHE1-B) gi|8953766|dbj|BAA98121.1| pyruvate
dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) [Arabidopsis thaliana]
gi|17979466|gb|AAL50070.1| AT5g50850/K16E14_1
[Arabidopsis thaliana] gi|23507745|gb|AAN38676.1|
At5g50850/K16E14_1 [Arabidopsis thaliana]
Length = 363
Score = 127 bits (320), Expect = 8e-29
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = -1
Query: 603 VEEGFPQHGVGAEICTSVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 424
VEEGFPQHGV AEIC SV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA
Sbjct: 295 VEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRA 354
Query: 423 AKRACYRS 400
+KRACYRS
Sbjct: 355 SKRACYRS 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,090,157
Number of Sequences: 1393205
Number of extensions: 11419315
Number of successful extensions: 37126
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 34152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36823
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
