Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002080A_C01 KMC002080A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03474.1| syntaxin [Glycine max] 97 1e-19
ref|NP_568671.1| syntaxin SYP22 (VAM3); protein id: At5g46860.1,... 91 1e-17
pir||D71447 probable syntaxin - Arabidopsis thaliana 90 2e-17
dbj|BAA84625.1| unnamed protein product [Oryza sativa (japonica ... 89 4e-17
ref|NP_197185.1| syntaxin SYP21 (PEP12); protein id: At5g16830.1... 83 2e-15
>gb|AAN03474.1| syntaxin [Glycine max]
Length = 273
Score = 97.4 bits (241), Expect = 1e-19
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = -3
Query: 592 GIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKS 413
GI+E+++QIG+ NEIFKDLAVLVH+QG +IDDI SNI+ S AT+QAK QLAKASK+ +S
Sbjct: 189 GIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRS 248
Query: 412 KTKWCWWVLVIFVAVLVILLLVL 344
+ +LVIF VL+I+++VL
Sbjct: 249 NSSLTCLLLVIFGIVLLIVIIVL 271
>ref|NP_568671.1| syntaxin SYP22 (VAM3); protein id: At5g46860.1, supported by cDNA:
13184., supported by cDNA: gi_14326484, supported by
cDNA: gi_18086568, supported by cDNA: gi_1850545
[Arabidopsis thaliana] gi|28380153|sp|P93654|SY22_ARATH
Syntaxin 22 (AtSYP22) (AtVAM3) gi|1850546|gb|AAC49823.1|
syntaxin related protein AtVam3p [Arabidopsis thaliana]
gi|8809669|dbj|BAA97220.1| syntaxin related protein
AtVam3p [Arabidopsis thaliana]
gi|14326485|gb|AAK60288.1|AF385695_1 AT4g17730/dl4901w
[Arabidopsis thaliana] gi|18086569|gb|AAL57708.1|
AT4g17730/dl4901w [Arabidopsis thaliana]
gi|21537334|gb|AAM61675.1| syntaxin [Arabidopsis
thaliana] gi|22137302|gb|AAM91496.1| AT4g17730/dl4901w
[Arabidopsis thaliana]
Length = 268
Score = 90.9 bits (224), Expect = 1e-17
Identities = 47/83 (56%), Positives = 64/83 (76%)
Frame = -3
Query: 592 GIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKS 413
GI+E+ +QIG+ NEIFKDLAVLV+DQG +IDDI ++ID S ATSQ K QL +A+K+ KS
Sbjct: 184 GIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKS 243
Query: 412 KTKWCWWVLVIFVAVLVILLLVL 344
+ +LVIF VL+I+++VL
Sbjct: 244 NSSLTCLLLVIFGIVLLIVIIVL 266
>pir||D71447 probable syntaxin - Arabidopsis thaliana
Length = 275
Score = 90.1 bits (222), Expect = 2e-17
Identities = 46/83 (55%), Positives = 64/83 (76%)
Frame = -3
Query: 592 GIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKS 413
GI+E+++QIG+ +EIFKDLAVLVHDQG +IDDI ++ID S AT+Q K L KASK+ +S
Sbjct: 191 GIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLRKASKTQRS 250
Query: 412 KTKWCWWVLVIFVAVLVILLLVL 344
+ +LVIF VL+I+++VL
Sbjct: 251 NSSLTCLLLVIFGIVLMIVIIVL 273
>dbj|BAA84625.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6016857|dbj|BAA85200.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 89.0 bits (219), Expect = 4e-17
Identities = 46/83 (55%), Positives = 65/83 (77%)
Frame = -3
Query: 592 GIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKS 413
GI+E++ QI + NEIFKDLAVLVHDQG +IDDI ++I+ + AT+QAK QL+KA+K+ KS
Sbjct: 196 GIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHIENAVIATTQAKGQLSKAAKTQKS 255
Query: 412 KTKWCWWVLVIFVAVLVILLLVL 344
+ +LVIF VL+I+++VL
Sbjct: 256 NSSLICLLLVIFGVVLLIVIIVL 278
>ref|NP_197185.1| syntaxin SYP21 (PEP12); protein id: At5g16830.1, supported by cDNA:
8257., supported by cDNA: gi_15724188, supported by
cDNA: gi_899121 [Arabidopsis thaliana]
gi|2501101|sp|Q39233|SY21_ARATH Syntaxin 21 (AtSYP21)
(PEP12 homolog) (AtPEP12) (aPEP12)
gi|11358870|pir||T51515 syntaxin homolog F5E19_170
[similarity] - Arabidopsis thaliana
gi|899122|gb|AAA87296.1| syntaxin of plants 21
[Arabidopsis thaliana] gi|9755735|emb|CAC01847.1|
syntaxin homologue [Arabidopsis thaliana]
gi|15724189|gb|AAL06486.1|AF411797_1 AT5g16830/F5E19_170
[Arabidopsis thaliana]
Length = 279
Score = 83.2 bits (204), Expect = 2e-15
Identities = 40/85 (47%), Positives = 64/85 (75%)
Frame = -3
Query: 592 GIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKS 413
GIRE+E+QI N +FKDLA++V+ QG ++DDI SN+D S AT+QA VQL KA+K+ +S
Sbjct: 195 GIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRS 254
Query: 412 KTKWCWWVLVIFVAVLVILLLVLIL 338
+ +++IF VL+I+++V+++
Sbjct: 255 NSSLTCLLILIFGIVLLIVIIVVLV 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,144,111
Number of Sequences: 1393205
Number of extensions: 9684882
Number of successful extensions: 25934
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 25014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25883
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
