Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002078A_C02 KMC002078A_c02
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565213.1| expressed protein; protein id: At1g79590.1, sup... 67 2e-23
gb|AAM64357.1| unknown [Arabidopsis thaliana] 67 2e-23
ref|NP_563994.1| expressed protein; protein id: At1g16240.1, sup... 67 3e-23
pir||C96827 protein F20B17.2 [imported] - Arabidopsis thaliana g... 64 4e-19
gb|AAM52319.1|AC105363_8 Hypothetical protein [Oryza sativa (jap... 59 2e-15
>ref|NP_565213.1| expressed protein; protein id: At1g79590.1, supported by cDNA:
23407., supported by cDNA: gi_13811645 [Arabidopsis
thaliana] gi|28380159|sp|Q94KK7|SY52_ARATH Syntaxin 52
(AtSYP52) gi|13811646|gb|AAK40224.1|AF355756_1 syntaxin
of plants 52 [Arabidopsis thaliana]
gi|28393106|gb|AAO41986.1| unknown protein [Arabidopsis
thaliana]
Length = 233
Score = 67.0 bits (162), Expect(2) = 2e-23
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = -1
Query: 551 TVISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRPCAEAL 420
TV+STKHIALAVNEELTL TRLIDDLD VD+TDSRLR ++L
Sbjct: 153 TVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLRRVQKSL 196
Score = 63.5 bits (153), Expect(2) = 2e-23
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = -2
Query: 436 RVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKYL 308
RVQK LA++NK K GCSC+ MLL+V+GIV L +VIWLLVKYL
Sbjct: 191 RVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233
>gb|AAM64357.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 67.0 bits (162), Expect(2) = 2e-23
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = -1
Query: 551 TVISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRPCAEAL 420
TV+STKHIALAVNEELTL TRLIDDLD VD+TDSRLR ++L
Sbjct: 153 TVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLRRVQKSL 196
Score = 63.5 bits (153), Expect(2) = 2e-23
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = -2
Query: 436 RVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKYL 308
RVQK LA++NK K GCSC+ MLL+V+GIV L +VIWLLVKYL
Sbjct: 191 RVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233
>ref|NP_563994.1| expressed protein; protein id: At1g16240.1, supported by cDNA:
145295., supported by cDNA: gi_13811643, supported by
cDNA: gi_18650629, supported by cDNA: gi_20453318
[Arabidopsis thaliana] gi|28380164|sp|Q9SA23|SY51_ARATH
Syntaxin 51 (AtSYP51) gi|25372946|pir||C86297
hypothetical protein F3O9.4 - Arabidopsis thaliana
gi|4966344|gb|AAD34675.1|AC006341_3 ESTs gb|F15498,
gb|H37515, gb|T41906, gb|T22448, gb|W43356 and gb|T20739
come from this gene. [Arabidopsis thaliana]
gi|13811644|gb|AAK40223.1|AF355755_1 syntaxin of plants
51 [Arabidopsis thaliana] gi|18650630|gb|AAL75885.1|
At1g16240/F3O9_4 [Arabidopsis thaliana]
gi|20453319|gb|AAM19898.1| At1g16240/F3O9_4 [Arabidopsis
thaliana] gi|21553458|gb|AAM62551.1| unknown
[Arabidopsis thaliana]
Length = 232
Score = 66.6 bits (161), Expect(2) = 3e-23
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = -1
Query: 551 TVISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRPCAEAL 420
TV+STKHIALAV+EEL L TRLIDDLD HVDVTDSRLR ++L
Sbjct: 152 TVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDSRLRRVQKSL 195
Score = 63.5 bits (153), Expect(2) = 3e-23
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 436 RVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKYL 308
RVQK LAV+NK + GCSC+ MLL+V+GIV L VVIW+LVKY+
Sbjct: 190 RVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232
>pir||C96827 protein F20B17.2 [imported] - Arabidopsis thaliana
gi|7715588|gb|AAF68106.1|AC010793_1 F20B17.2
[Arabidopsis thaliana]
Length = 260
Score = 63.5 bits (153), Expect(2) = 4e-19
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = -2
Query: 436 RVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKYL 308
RVQK LA++NK K GCSC+ MLL+V+GIV L +VIWLLVKYL
Sbjct: 218 RVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 260
Score = 52.4 bits (124), Expect(2) = 4e-19
Identities = 34/71 (47%), Positives = 38/71 (52%), Gaps = 27/71 (38%)
Frame = -1
Query: 551 TVISTKHIALAVNEELTLHTRLI---------------------------DDLDEHVDVT 453
TV+STKHIALAVNEELTL TRLI DDLD VD+T
Sbjct: 153 TVMSTKHIALAVNEELTLQTRLIVCLRCCSLLFLLILISYSNEMGLSSMQDDLDYDVDIT 212
Query: 452 DSRLRPCAEAL 420
DSRLR ++L
Sbjct: 213 DSRLRRVQKSL 223
>gb|AAM52319.1|AC105363_8 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 324
Score = 59.3 bits (142), Expect(2) = 2e-15
Identities = 28/46 (60%), Positives = 36/46 (77%)
Frame = -1
Query: 551 TVISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRPCAEALGS 414
T++STKHIALA+NEEL LHTRLIDDLDE + T ++L+ + L S
Sbjct: 245 TIVSTKHIALAINEELDLHTRLIDDLDEKTEETSNQLQRAQKKLKS 290
Score = 43.9 bits (102), Expect(2) = 2e-15
Identities = 18/42 (42%), Positives = 27/42 (63%)
Frame = -2
Query: 436 RVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKY 311
R QK L + R + SC C+LL+V+ +VILV ++W L+ Y
Sbjct: 283 RAQKKLKSVTTRMRKSASCSCLLLSVIAVVILVALLWALIMY 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,458,414
Number of Sequences: 1393205
Number of extensions: 8977634
Number of successful extensions: 25548
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25517
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
