KMC002076A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002076A_C01 KMC002076A_c01
CGTATGTGCACCTAAAAAATTTATTTGTAAGAGAGAAAATGAGACACAAACTTAATGGTC
CAATGCTTAGCTACCTACCTTATATCTATCCATCTTGAATAATAAATACACATAACGTTC
CTTTACATTACACTAGATCCGCACTCTTCCACTAATTCAGTTTAACCTTCCTTTTCCTCT
GTTCCATTTCAAAGAACAACACCAAACTCAGTGATCTTGATAAAAAATATGGGAACCCAG
TCTAAGCCTGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGG
ACAAGGCCTTACGATGTGTTGCTTCGATTTCTTGCACTGTCACTCACTCTGGTGGCTACT
ATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTATGCTGGAATGCAGTTCAAA
GCCACTGnTAACATGTTTCCTATGTTATTTATGTTAATATAGATATTATCAAAGACCATC
TCCTATGGAACCTGATTTTGCTTATGTGTGCGCAATAAATATCATTCTATCAAAGACCAT
CTCTGATT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002076A_C01 KMC002076A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567473.1| expressed protein; protein id: At4g15630.1, sup... 34 1.0
gb|AAM63034.1| unknown [Arabidopsis thaliana] 33 1.7
dbj|BAB90702.1| putative cytochrome p450 [Oryza sativa (japonica... 32 3.9
gb|AAM67044.1| unknown [Arabidopsis thaliana] 32 3.9
ref|NP_193772.1| putative protein; protein id: At4g20390.1, supp... 32 5.0
>ref|NP_567473.1| expressed protein; protein id: At4g15630.1, supported by cDNA: 933.
[Arabidopsis thaliana] gi|7485071|pir||C71421
hypothetical protein - Arabidopsis thaliana
gi|2244919|emb|CAB10341.1| hypothetical protein
[Arabidopsis thaliana] gi|7268311|emb|CAB78605.1|
hypothetical protein [Arabidopsis thaliana]
Length = 190
Score = 34.3 bits (77), Expect = 1.0
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 229 MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTI 396
M +SK VDG+ + E +R + ++ +R LAL LT+VA ++ V K+TK +
Sbjct: 1 MEHESKNKVDGMEMEKGKKESGSR-KGLELTMRVLALVLTMVAATVLGVAKQTKVV 55
>gb|AAM63034.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 33.5 bits (75), Expect = 1.7
Identities = 16/24 (66%), Positives = 19/24 (78%)
Frame = +1
Query: 322 LRFLALSLTLVATIIVAVNKETKT 393
LR LALS TL A I++ +NKETKT
Sbjct: 22 LRLLALSATLSAAIVMGLNKETKT 45
>dbj|BAB90702.1| putative cytochrome p450 [Oryza sativa (japonica cultivar-group)]
Length = 497
Score = 32.3 bits (72), Expect = 3.9
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 384 LLVNRHNDSSHQSE*QCKKSKQHIVRPCPCWL--LHHLHITVDTVHIRLRLGSH 229
LL + ++H++ CK+++ H+ P P L + HLH+ D H+ LR +H
Sbjct: 13 LLALHYLATNHRTPTTCKETRNHLSPPSPPRLPIIGHLHLIGDLPHVSLRELAH 66
>gb|AAM67044.1| unknown [Arabidopsis thaliana]
Length = 190
Score = 32.3 bits (72), Expect = 3.9
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +1
Query: 229 MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTI 396
M +SK V+G+ + E +R + ++ +R LAL LT+VA ++ V K+TK +
Sbjct: 1 MEHESKNKVNGMEMEKGKKESGSR-KGLELTMRVLALVLTMVAATVLGVAKQTKVV 55
>ref|NP_193772.1| putative protein; protein id: At4g20390.1, supported by cDNA:
248721. [Arabidopsis thaliana] gi|7486757|pir||T10581
hypothetical protein F9F13.40 - Arabidopsis thaliana
gi|5262162|emb|CAB45805.1| putative protein [Arabidopsis
thaliana] gi|7268835|emb|CAB79039.1| putative protein
[Arabidopsis thaliana]
Length = 197
Score = 32.0 bits (71), Expect = 5.0
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 277 KVVEKPTRTRPYDVLL--RFLALSLTLVATIIVAVNKETKTISYA 405
K+V T+ + +LL R A TL A I++++NKETKT+ A
Sbjct: 5 KIVVAGGTTKSWKLLLGLRIFAFMATLAAAIVMSLNKETKTLVVA 49
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,876,169
Number of Sequences: 1393205
Number of extensions: 10416954
Number of successful extensions: 20250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20245
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR002e08_f |
BP076084 |
1 |
203 |
2 |
MWL054d05_f |
AV769504 |
148 |
434 |
3 |
GENf034g11 |
BP059820 |
173 |
667 |
|
Lotus japonicus
Kazusa DNA Research Institute