KMC002076A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC002076A_C01 KMC002076A_c01
CGTATGTGCACCTAAAAAATTTATTTGTAAGAGAGAAAATGAGACACAAACTTAATGGTC
CAATGCTTAGCTACCTACCTTATATCTATCCATCTTGAATAATAAATACACATAACGTTC
CTTTACATTACACTAGATCCGCACTCTTCCACTAATTCAGTTTAACCTTCCTTTTCCTCT
GTTCCATTTCAAAGAACAACACCAAACTCAGTGATCTTGATAAAAAATATGGGAACCCAG
TCTAAGCCTGATGTGGACGGTGTCCACAGTGATGTGAAGGTGGTGGAGAAGCCAACAAGG
ACAAGGCCTTACGATGTGTTGCTTCGATTTCTTGCACTGTCACTCACTCTGGTGGCTACT
ATCATTGTGGCGGTTAACAAGGAGACAAAGACCATCTCCTATGCTGGAATGCAGTTCAAA
GCCACTGnTAACATGTTTCCTATGTTATTTATGTTAATATAGATATTATCAAAGACCATC
TCCTATGGAACCTGATTTTGCTTATGTGTGCGCAATAAATATCATTCTATCAAAGACCAT
CTCTGATT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002076A_C01 KMC002076A_c01
         (548 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567473.1| expressed protein; protein id: At4g15630.1, sup...    34  1.0
gb|AAM63034.1| unknown [Arabidopsis thaliana]                          33  1.7
dbj|BAB90702.1| putative cytochrome p450 [Oryza sativa (japonica...    32  3.9
gb|AAM67044.1| unknown [Arabidopsis thaliana]                          32  3.9
ref|NP_193772.1| putative protein; protein id: At4g20390.1, supp...    32  5.0

>ref|NP_567473.1| expressed protein; protein id: At4g15630.1, supported by cDNA: 933.
           [Arabidopsis thaliana] gi|7485071|pir||C71421
           hypothetical protein - Arabidopsis thaliana
           gi|2244919|emb|CAB10341.1| hypothetical protein
           [Arabidopsis thaliana] gi|7268311|emb|CAB78605.1|
           hypothetical protein [Arabidopsis thaliana]
          Length = 190

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +1

Query: 229 MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTI 396
           M  +SK  VDG+  +    E  +R +  ++ +R LAL LT+VA  ++ V K+TK +
Sbjct: 1   MEHESKNKVDGMEMEKGKKESGSR-KGLELTMRVLALVLTMVAATVLGVAKQTKVV 55

>gb|AAM63034.1| unknown [Arabidopsis thaliana]
          Length = 197

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 16/24 (66%), Positives = 19/24 (78%)
 Frame = +1

Query: 322 LRFLALSLTLVATIIVAVNKETKT 393
           LR LALS TL A I++ +NKETKT
Sbjct: 22  LRLLALSATLSAAIVMGLNKETKT 45

>dbj|BAB90702.1| putative cytochrome p450 [Oryza sativa (japonica cultivar-group)]
          Length = 497

 Score = 32.3 bits (72), Expect = 3.9
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 384 LLVNRHNDSSHQSE*QCKKSKQHIVRPCPCWL--LHHLHITVDTVHIRLRLGSH 229
           LL   +  ++H++   CK+++ H+  P P  L  + HLH+  D  H+ LR  +H
Sbjct: 13  LLALHYLATNHRTPTTCKETRNHLSPPSPPRLPIIGHLHLIGDLPHVSLRELAH 66

>gb|AAM67044.1| unknown [Arabidopsis thaliana]
          Length = 190

 Score = 32.3 bits (72), Expect = 3.9
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +1

Query: 229 MGTQSKPDVDGVHSDVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKTI 396
           M  +SK  V+G+  +    E  +R +  ++ +R LAL LT+VA  ++ V K+TK +
Sbjct: 1   MEHESKNKVNGMEMEKGKKESGSR-KGLELTMRVLALVLTMVAATVLGVAKQTKVV 55

>ref|NP_193772.1| putative protein; protein id: At4g20390.1, supported by cDNA:
           248721. [Arabidopsis thaliana] gi|7486757|pir||T10581
           hypothetical protein F9F13.40 - Arabidopsis thaliana
           gi|5262162|emb|CAB45805.1| putative protein [Arabidopsis
           thaliana] gi|7268835|emb|CAB79039.1| putative protein
           [Arabidopsis thaliana]
          Length = 197

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 277 KVVEKPTRTRPYDVLL--RFLALSLTLVATIIVAVNKETKTISYA 405
           K+V     T+ + +LL  R  A   TL A I++++NKETKT+  A
Sbjct: 5   KIVVAGGTTKSWKLLLGLRIFAFMATLAAAIVMSLNKETKTLVVA 49

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,876,169
Number of Sequences: 1393205
Number of extensions: 10416954
Number of successful extensions: 20250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20245
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR002e08_f BP076084 1 203
2 MWL054d05_f AV769504 148 434
3 GENf034g11 BP059820 173 667




Lotus japonicus
Kazusa DNA Research Institute