Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002075A_C03 KMC002075A_c03
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43094.1| unknown protein [Arabidopsis thaliana] 85 4e-16
pir||A96632 hypothetical protein F8A5.19 [imported] - Arabidopsi... 85 4e-16
ref|NP_564760.1| expressed protein; protein id: At1g60670.1, sup... 85 4e-16
gb|AAF13074.1|AC009176_1 unknown protein, 5' partial [Arabidopsi... 81 7e-15
ref|NP_187413.1| hypothetical protein; protein id: At3g07565.1 [... 81 7e-15
>dbj|BAC43094.1| unknown protein [Arabidopsis thaliana]
Length = 232
Score = 85.1 bits (209), Expect = 4e-16
Identities = 40/72 (55%), Positives = 58/72 (80%)
Frame = -1
Query: 485 LMEQNAQAFRQIRTHLSTYKFQDNIDLFCRTKHNLNSILNDMRRVPGIMSQMPPLPVTID 306
L++QNAQAF QI +LS K QDNI LF + ++N+++IL DM+ +PGIMS+MP LPV+I+
Sbjct: 142 LLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTDMKEMPGIMSRMPALPVSIN 201
Query: 305 EDLASSILPNRT 270
+DLAS++L + T
Sbjct: 202 DDLASNLLSSTT 213
>pir||A96632 hypothetical protein F8A5.19 [imported] - Arabidopsis thaliana
gi|2462760|gb|AAB71979.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 249
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = -1
Query: 482 MEQNAQAFRQIRTHLSTYKFQDNIDLFCRTKHNLNSILNDMRRVPGIMSQMPPLPVTIDE 303
+ QNAQAF QI ++LS K QDN+ LF ++N+++ILNDM+ +PGI+S+MPPLPV+I+
Sbjct: 160 LRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAILNDMKEMPGIISRMPPLPVSINN 219
Query: 302 DLASSILPNRT**GIVLTPSTLLQK 228
DLASS++ + T PS++ K
Sbjct: 220 DLASSLVTSATQPRSYTIPSSIYLK 244
>ref|NP_564760.1| expressed protein; protein id: At1g60670.1, supported by cDNA:
gi_15028080, supported by cDNA: gi_20259308 [Arabidopsis
thaliana] gi|15028081|gb|AAK76571.1| unknown protein
[Arabidopsis thaliana] gi|20259309|gb|AAM14390.1|
unknown protein [Arabidopsis thaliana]
Length = 254
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = -1
Query: 482 MEQNAQAFRQIRTHLSTYKFQDNIDLFCRTKHNLNSILNDMRRVPGIMSQMPPLPVTIDE 303
+ QNAQAF QI ++LS K QDN+ LF ++N+++ILNDM+ +PGI+S+MPPLPV+I+
Sbjct: 165 LRQNAQAFSQISSNLSVCKPQDNVSLFYMARNNISAILNDMKEMPGIISRMPPLPVSINN 224
Query: 302 DLASSILPNRT**GIVLTPSTLLQK 228
DLASS++ + T PS++ K
Sbjct: 225 DLASSLVTSATQPRSYTIPSSIYLK 249
>gb|AAF13074.1|AC009176_1 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 197
Score = 80.9 bits (198), Expect = 7e-15
Identities = 33/69 (47%), Positives = 53/69 (75%)
Frame = -1
Query: 485 LMEQNAQAFRQIRTHLSTYKFQDNIDLFCRTKHNLNSILNDMRRVPGIMSQMPPLPVTID 306
L+EQNAQ F Q+ T+ S ++ +N+++ C+ + N+ +ILND+ +P +M QMPPLPV ++
Sbjct: 121 LLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKLN 180
Query: 305 EDLASSILP 279
E+LA+SILP
Sbjct: 181 EELANSILP 189
>ref|NP_187413.1| hypothetical protein; protein id: At3g07565.1 [Arabidopsis
thaliana] gi|27754217|gb|AAO22562.1| unknown protein
[Arabidopsis thaliana]
Length = 258
Score = 80.9 bits (198), Expect = 7e-15
Identities = 33/69 (47%), Positives = 53/69 (75%)
Frame = -1
Query: 485 LMEQNAQAFRQIRTHLSTYKFQDNIDLFCRTKHNLNSILNDMRRVPGIMSQMPPLPVTID 306
L+EQNAQ F Q+ T+ S ++ +N+++ C+ + N+ +ILND+ +P +M QMPPLPV ++
Sbjct: 182 LLEQNAQMFNQLSTNFSAFQLHENVNILCKARDNILAILNDLNDMPEVMKQMPPLPVKLN 241
Query: 305 EDLASSILP 279
E+LA+SILP
Sbjct: 242 EELANSILP 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,123,594
Number of Sequences: 1393205
Number of extensions: 8014493
Number of successful extensions: 19461
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19450
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
