Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002074A_C01 KMC002074A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41898.1| putative biotin synthase (Bio B) [Arabidopsis tha... 183 1e-45
ref|NP_181864.1| biotin synthase (Bio B); protein id: At2g43360.... 183 1e-45
ref|ZP_00116870.1| hypothetical protein [Cytophaga hutchinsonii] 130 1e-29
ref|NP_225238.1| Biotin Synthase [Chlamydophila pneumoniae CWL02... 119 3e-26
ref|NP_635783.1| biotin synthase [Xanthomonas campestris pv. cam... 107 1e-22
>gb|AAO41898.1| putative biotin synthase (Bio B) [Arabidopsis thaliana]
Length = 378
Score = 183 bits (464), Expect = 1e-45
Identities = 92/112 (82%), Positives = 103/112 (91%)
Frame = -1
Query: 563 LIAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANS 384
L+AVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQALCFLAGANS
Sbjct: 267 LLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANS 326
Query: 383 IFTGEKLLTTANNDFDADQLMFKVLGLLPKAPSFQDDETNEAEDIKEAASSS 228
IFTGEKLLTT NNDFDADQLMFK LGL+PK PSF +D+ +E+E+ ++ AS+S
Sbjct: 327 IFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD-SESENCEKVASAS 377
>ref|NP_181864.1| biotin synthase (Bio B); protein id: At2g43360.1, supported by
cDNA: 42038., supported by cDNA: gi_1403661, supported
by cDNA: gi_1769456 [Arabidopsis thaliana]
gi|1705463|sp|P54967|BIOB_ARATH Biotin synthase (Biotin
synthetase) gi|2129547|pir||S71201 biotin synthase (EC
2.8.1.6) bioB [similarity] - Arabidopsis thaliana
gi|1045316|gb|AAA80226.1| biotin sythase
gi|1403662|gb|AAC49445.1| BIO2 protein
gi|1769457|gb|AAB39953.1| biotin synthase [Arabidopsis
thaliana] gi|2288983|gb|AAB64312.1| biotin synthase (Bio
B) [Arabidopsis thaliana] gi|1589016|prf||2209438A
biotin synthase
Length = 378
Score = 183 bits (464), Expect = 1e-45
Identities = 92/112 (82%), Positives = 103/112 (91%)
Frame = -1
Query: 563 LIAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANS 384
L+AVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQALCFLAGANS
Sbjct: 267 LLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANS 326
Query: 383 IFTGEKLLTTANNDFDADQLMFKVLGLLPKAPSFQDDETNEAEDIKEAASSS 228
IFTGEKLLTT NNDFDADQLMFK LGL+PK PSF +D+ +E+E+ ++ AS+S
Sbjct: 327 IFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD-SESENCEKVASAS 377
>ref|ZP_00116870.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 337
Score = 130 bits (326), Expect = 1e-29
Identities = 67/106 (63%), Positives = 82/106 (77%)
Frame = -1
Query: 563 LIAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANS 384
L+ V+GTPL+DQ V +WEM+RMIATARI+MPKAMVRLSAGRVR + EQALCFLAGANS
Sbjct: 226 LVPVEGTPLEDQPRVSVWEMVRMIATARIIMPKAMVRLSAGRVRMNTEEQALCFLAGANS 285
Query: 383 IFTGEKLLTTANNDFDADQLMFKVLGLLPKAPSFQDDETNEAEDIK 246
IF G+KLLTT N + +AD+ MF+VL L P+ Q + +A IK
Sbjct: 286 IFAGDKLLTTPNPEVNADKEMFQVLNLKPR----QSFKNGDAPKIK 327
>ref|NP_225238.1| Biotin Synthase [Chlamydophila pneumoniae CWL029]
gi|15836575|ref|NP_301099.1| biotin synthase
[Chlamydophila pneumoniae J138]
gi|16751981|ref|NP_445347.1| biotin synthase
[Chlamydophila pneumoniae AR39] gi|7438208|pir||H72004
biotin synthase (EC 2.8.1.6) bioB CP0808 [similarity] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
gi|25294053|pir||A86621 biotin synthase [imported] -
Chlamydophila pneumoniae (strain J138)
gi|4377377|gb|AAD19181.1| Biotin Synthase [Chlamydophila
pneumoniae CWL029] gi|7189723|gb|AAF38605.1| biotin
synthase [Chlamydophila pneumoniae AR39]
gi|8979417|dbj|BAA99251.1| biotin synthase
[Chlamydophila pneumoniae J138]
Length = 331
Score = 119 bits (297), Expect = 3e-26
Identities = 57/97 (58%), Positives = 73/97 (74%)
Frame = -1
Query: 554 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT 375
+ GTPLQDQ P+ WE++R IATAR+V P++MVRL+AGR ++ +Q LCFLAGANSIF
Sbjct: 229 IDGTPLQDQPPISFWEVLRTIATARVVFPRSMVRLAAGRAFLTVEQQTLCFLAGANSIFY 288
Query: 374 GEKLLTTANNDFDADQLMFKVLGLLPKAPSFQDDETN 264
G+KLLT NND D D M K+LGL+P+ PSF + N
Sbjct: 289 GDKLLTVENNDIDEDAEMIKLLGLIPR-PSFGIERGN 324
>ref|NP_635783.1| biotin synthase [Xanthomonas campestris pv. campestris str. ATCC
33913] gi|21111368|gb|AAM39707.1| biotin synthase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 344
Score = 107 bits (267), Expect = 1e-22
Identities = 56/89 (62%), Positives = 66/89 (73%)
Frame = -1
Query: 563 LIAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANS 384
L+ V GTPL +P++ +E +RMIA ARI MPK+MVRLSAGR S QALCFLAGANS
Sbjct: 226 LVQVPGTPLHGTEPLDAFEFVRMIAVARIAMPKSMVRLSAGREAMSDELQALCFLAGANS 285
Query: 383 IFTGEKLLTTANNDFDADQLMFKVLGLLP 297
IF GEKLLTT N D + DQ +F+ LGL P
Sbjct: 286 IFYGEKLLTTGNPDTERDQGLFQRLGLRP 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,362,097
Number of Sequences: 1393205
Number of extensions: 9067521
Number of successful extensions: 24569
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 23975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24554
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
