Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002073A_C01 KMC002073A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06597 serpin homolog WZS3 - wheat gi|1885346|emb|CAA72274.... 61 1e-08
ref|NP_176586.1| hypothetical protein; protein id: At1g64030.1 [... 60 2e-08
emb|CAB52710.1| serpin [Triticum aestivum] 60 3e-08
pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Tri... 59 7e-08
pir||T02362 hypothetical protein T8F5.17 - Arabidopsis thaliana ... 59 7e-08
>pir||T06597 serpin homolog WZS3 - wheat gi|1885346|emb|CAA72274.1| serpin
[Triticum aestivum]
Length = 398
Score = 60.8 bits (146), Expect = 1e-08
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -2
Query: 594 PPPPGLEFIADHPFLFLIREDFSGTILFVGQVLNPL 487
PPP L+FI DHPFLFLIRED SG +LF+G V+NPL
Sbjct: 360 PPPSVLDFIVDHPFLFLIREDTSGVVLFIGHVVNPL 395
>ref|NP_176586.1| hypothetical protein; protein id: At1g64030.1 [Arabidopsis
thaliana]
Length = 385
Score = 60.1 bits (144), Expect = 2e-08
Identities = 24/43 (55%), Positives = 35/43 (80%)
Frame = -2
Query: 591 PPPGLEFIADHPFLFLIREDFSGTILFVGQVLNPLGGANGTTT 463
PP ++F+ADHPFLFLIRE+ +GT+LFVGQ+ +P G +G+ +
Sbjct: 338 PPKKIDFVADHPFLFLIREEKTGTVLFVGQIFDPSGPCSGSNS 380
>emb|CAB52710.1| serpin [Triticum aestivum]
Length = 398
Score = 59.7 bits (143), Expect = 3e-08
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -2
Query: 591 PPPGLEFIADHPFLFLIREDFSGTILFVGQVLNPL 487
PP ++FIADHPFLFLIRED SG +LF+G V+NPL
Sbjct: 361 PPSDMDFIADHPFLFLIREDTSGVVLFIGHVVNPL 395
>pir||S65782 serpin - wheat gi|871551|emb|CAA90071.1| serpin [Triticum aestivum]
Length = 398
Score = 58.5 bits (140), Expect = 7e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -2
Query: 591 PPPGLEFIADHPFLFLIREDFSGTILFVGQVLNPL 487
PP ++FIADHPFLFL+RED SG +LF+G V+NPL
Sbjct: 361 PPSVMDFIADHPFLFLVREDISGVVLFMGHVVNPL 395
>pir||T02362 hypothetical protein T8F5.17 - Arabidopsis thaliana
gi|3335344|gb|AAC27146.1|AAC27146 Similar to serpin gene
homolog gb|Z49890 from A. thaliana. [Arabidopsis
thaliana]
Length = 355
Score = 58.5 bits (140), Expect = 7e-08
Identities = 23/36 (63%), Positives = 30/36 (82%)
Frame = -2
Query: 597 GPPPPGLEFIADHPFLFLIREDFSGTILFVGQVLNP 490
GPPP ++F+ADHPF+FLIRED +GT+LF GQ+ P
Sbjct: 315 GPPPKKIDFVADHPFIFLIREDKTGTVLFFGQLFKP 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,263,216
Number of Sequences: 1393205
Number of extensions: 12342000
Number of successful extensions: 42774
Number of sequences better than 10.0: 443
Number of HSP's better than 10.0 without gapping: 38798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42236
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
