Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002072A_C01 KMC002072A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_509865.1| 7 transmembrane receptor, rhodopsin-type family... 33 1.4
gb|EAA20463.1| phosphatidylinositol transfer protein 2 [Plasmodi... 32 2.4
ref|NP_002709.2| protein phosphatase 2 (formerly 2A), regulatory... 31 5.3
gb|AAO51088.1| similar to Plasmodium falciparum. Hypothetical pr... 31 6.9
ref|XP_135153.2| RIKEN cDNA 3222402P14 [Mus musculus] 30 9.1
>ref|NP_509865.1| 7 transmembrane receptor, rhodopsin-type family member family
member [Caenorhabditis elegans] gi|7499008|pir||T20837
hypothetical protein F13D2.2 - Caenorhabditis elegans
gi|3875836|emb|CAA90604.1| Hypothetical protein F13D2.2
[Caenorhabditis elegans]
Length = 400
Score = 33.1 bits (74), Expect = 1.4
Identities = 13/53 (24%), Positives = 33/53 (61%)
Frame = +2
Query: 2 VSNHVLIKFI*IMILFNLMGPSFVLYSNHKVLSLNNTTLISSSASLLKLNLNL 160
+S+++ I ++ +++LF + + +L K + ++N ++ S +LK+NLN+
Sbjct: 23 ISDYIEIAYLGLVLLFGVPANAVILQKLIKEMKMSNRDMVKSGFVMLKINLNI 75
>gb|EAA20463.1| phosphatidylinositol transfer protein 2 [Plasmodium yoelii yoelii]
Length = 738
Score = 32.3 bits (72), Expect = 2.4
Identities = 19/93 (20%), Positives = 44/93 (46%), Gaps = 15/93 (16%)
Frame = -2
Query: 456 DLKLCLELKSQLFDSSEGSGIMEGEGSEMLESGKAAEPARDETPAIGL------------ 313
+ ++C+ LK + + + + +G + + K AE E ++G+
Sbjct: 5 EFRICMPLKVEEYQKCQLYLVTKGTLEDAEQRIKNAEKYGSENNSVGVVILKNESYVENY 64
Query: 312 ---NYSLPKMVVTNEIDQETLNIVDKHFCSLED 223
Y+L K+ + +++ + LN VDK +C++E+
Sbjct: 65 TSGQYTLKKLNILHKMPKWLLNFVDKKYCTIEE 97
>ref|NP_002709.2| protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha;
protein phosphatase 2 (formerly 2A), regulatory subunit
B'' (PR 72), alpha isoform and (PR 130), beta isoform
[Homo sapiens] gi|543720|sp|Q06190|2ACA_HUMAN
Serine/threonine protein phosphatase 2A, 72/130 kDa
regulatory subunit B (PP2A, subunit B, B''-PR72/PR130)
(PP2A, subunit B, B72/B130 isoforms) (PP2A, subunit B,
PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform)
gi|539660|pir||B47114 phosphoprotein phosphatase (EC
3.1.3.16) 2A regulatory chain, extended form PR130 -
human gi|190220|gb|AAB02613.1| protein phosphatase 2A
130 kDa regulatory subunit
Length = 1150
Score = 31.2 bits (69), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 459 EDLKLCLELKSQLFDSSEGSGIMEGEGSEMLESGK 355
EDLK C ++ Q GS I EG G++ + S +
Sbjct: 241 EDLKKCTDIIKQCIKKKSGSSISEGSGNDTISSSE 275
>gb|AAO51088.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 1683
Score = 30.8 bits (68), Expect = 6.9
Identities = 23/75 (30%), Positives = 37/75 (48%)
Frame = +2
Query: 44 LFNLMGPSFVLYSNHKVLSLNNTTLISSSASLLKLNLNL*PKKKKLNLNHQEI*PHNSST 223
L NL S V Y+N ++NN I + + + LN+ +N+N E +NSS
Sbjct: 94 LVNLYDTSIVTYNNSNSNNINNNNKILYNVFIENIVLNI--INSTININRVEFSMNNSSN 151
Query: 224 SSREQKCLSTMLRVS 268
+S + LS ++R S
Sbjct: 152 NSNNE--LSMIIRNS 164
>ref|XP_135153.2| RIKEN cDNA 3222402P14 [Mus musculus]
Length = 1109
Score = 30.4 bits (67), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 459 EDLKLCLELKSQLFDSSEGSGIMEGEGSEMLESGK 355
EDLK C ++ Q G I EG G+E++ + +
Sbjct: 240 EDLKKCTDIIKQCIKKKSGGSISEGSGNEVISNSE 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,781,841
Number of Sequences: 1393205
Number of extensions: 6631659
Number of successful extensions: 19056
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19052
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
