Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002069A_C01 KMC002069A_c01
(871 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55228.1| serine palmitoyltransferase [Lotus japonicus] 162 6e-39
gb|AAM82590.1|AF525282_1 serine palmitoyltransferase [Brassica o... 132 9e-30
ref|NP_190447.1| serine palmitoyltransferase-like protein; prote... 130 2e-29
ref|NP_197756.1| serine palmitoyltransferase; protein id: At5g23... 130 3e-29
dbj|BAB03231.1| serine palmitoyltransferase [Arabidopsis thaliana] 130 3e-29
>dbj|BAC55228.1| serine palmitoyltransferase [Lotus japonicus]
Length = 489
Score = 162 bits (410), Expect = 6e-39
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = -3
Query: 869 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 690
PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV
Sbjct: 408 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 467
Query: 689 GIKYFPAEPSKQQQEGKTVKYD 624
GIKYFPAEPSKQQQEGKTVKYD
Sbjct: 468 GIKYFPAEPSKQQQEGKTVKYD 489
>gb|AAM82590.1|AF525282_1 serine palmitoyltransferase [Brassica oleracea]
Length = 103
Score = 132 bits (331), Expect = 9e-30
Identities = 64/82 (78%), Positives = 71/82 (86%)
Frame = -3
Query: 869 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 690
PAKIPAFSRECLR+NVAVV V FPATPLLLARARICISASHSREDL+ AL+VIS+ GDL
Sbjct: 22 PAKIPAFSRECLRENVAVVVVGFPATPLLLARARICISASHSREDLIKALKVISKAGDLT 81
Query: 689 GIKYFPAEPSKQQQEGKTVKYD 624
GIKYFPA P KQ++E +K D
Sbjct: 82 GIKYFPAAPKKQEEEKDRIKLD 103
>ref|NP_190447.1| serine palmitoyltransferase-like protein; protein id: At3g48780.1,
supported by cDNA: gi_15450817, supported by cDNA:
gi_16649024, supported by cDNA: gi_17221602 [Arabidopsis
thaliana] gi|11279409|pir||T49274 serine
C-palmitoyltransferase (EC 2.3.1.50) [similarity] -
Arabidopsis thaliana gi|7576216|emb|CAB87906.1| serine
palmitoyltransferase-like protein [Arabidopsis thaliana]
gi|15450818|gb|AAK96680.1| serine
palmitoyltransferase-like protein [Arabidopsis thaliana]
gi|16649025|gb|AAL24364.1| serine
palmitoyltransferase-like protein [Arabidopsis thaliana]
gi|17221603|dbj|BAB78461.1| serine palmitoyltransferase
[Arabidopsis thaliana] gi|21387155|gb|AAM47981.1| serine
palmitoyltransferase-like protein [Arabidopsis thaliana]
Length = 489
Score = 130 bits (328), Expect = 2e-29
Identities = 64/82 (78%), Positives = 70/82 (85%)
Frame = -3
Query: 869 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 690
PAKIPAFSRECLR+N+AVV V FPATPLLLARARICISASHSREDL+ ALQVIS+ GDL
Sbjct: 408 PAKIPAFSRECLRENLAVVVVGFPATPLLLARARICISASHSREDLIKALQVISKAGDLT 467
Query: 689 GIKYFPAEPSKQQQEGKTVKYD 624
GIKYFPA P KQ+ E +K D
Sbjct: 468 GIKYFPAAPKKQEVEKNGIKLD 489
>ref|NP_197756.1| serine palmitoyltransferase; protein id: At5g23670.1, supported by
cDNA: gi_15292790, supported by cDNA: gi_9309379
[Arabidopsis thaliana] gi|8809693|dbj|BAA97234.1| serine
palmitoyltransferase [Arabidopsis thaliana]
gi|15292791|gb|AAK92764.1| putative serine
palmitoyltransferase [Arabidopsis thaliana]
gi|22136834|gb|AAM91761.1| putative serine
palmitoyltransferase [Arabidopsis thaliana]
Length = 489
Score = 130 bits (327), Expect = 3e-29
Identities = 65/82 (79%), Positives = 70/82 (85%)
Frame = -3
Query: 869 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 690
PAKIPAFSRECLRQ VAVV V FPATPLLLARARICISASHSREDL+ AL+VIS+VGDL
Sbjct: 408 PAKIPAFSRECLRQKVAVVVVGFPATPLLLARARICISASHSREDLIRALKVISKVGDLS 467
Query: 689 GIKYFPAEPSKQQQEGKTVKYD 624
GIKYFPAEP K +Q +K D
Sbjct: 468 GIKYFPAEPKKIEQSKNDIKLD 489
>dbj|BAB03231.1| serine palmitoyltransferase [Arabidopsis thaliana]
Length = 489
Score = 130 bits (327), Expect = 3e-29
Identities = 65/82 (79%), Positives = 70/82 (85%)
Frame = -3
Query: 869 PAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLVTALQVISRVGDLV 690
PAKIPAFSRECLRQ VAVV V FPATPLLLARARICISASHSREDL+ AL+VIS+VGDL
Sbjct: 408 PAKIPAFSRECLRQKVAVVVVGFPATPLLLARARICISASHSREDLIRALKVISKVGDLS 467
Query: 689 GIKYFPAEPSKQQQEGKTVKYD 624
GIKYFPAEP K +Q +K D
Sbjct: 468 GIKYFPAEPKKIEQSKNDIKLD 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 694,221,836
Number of Sequences: 1393205
Number of extensions: 14396144
Number of successful extensions: 31578
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 30520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31567
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46545945579
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
