>KMC002067A_C01 KMC002067A_c01
GTTTGAAAGTTAGGATGTCTCCTCAAATTTACTTTCCTTTAATAGATTTGAGCCGCACGG
TTACACAGGTGTTCTTATTCAAAACAAACAAATATAGCAACCAAGTATTCTCCAACATGG
AAATCACTTAGTCAGAGAAAAGCAATAGTAAAAATTATGTGAGATTCGAATAACAGTGAG
ATTTCTTGGGTATACATATGATATACAAATTTACCAAATAAGGAAGGCTATGGTTTATTG
TCCTTCTCTCAATTTGACTGATTTACTCCAGTAACCTGTAAGCATCTTTTTCCTTCATCA
TTTGAAATTCTTATATACAGGTCCAATGGTTTGTGATGTCCATCATAATCGCTTCTCAAT
TTTCACAGCAGTACTGGAATTAGAATCAAGGGGAATGAAACAGAAGAATAACTCCTGTGA
TCAGCAATGCTACAGAGCATAGTAACGCAGCAATTGCAGAGGCT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002067A_C01 KMC002067A_c01
         (464 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_783290.1| ycf1 protein [Atropa belladonna] gi|20068391|em...    35  0.39
sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF 1901)      33  1.1
pir||A05218 hypothetical protein 1244 - common tobacco chloroplast     33  1.1
gb|AAA21565.1| protein tyrosine kinase gi|745064|prf||2015390A J...    32  2.5
pir||S48053 protein tyrosine kinase - mouse                            32  2.5

>ref|NP_783290.1| ycf1 protein [Atropa belladonna] gi|20068391|emb|CAC88104.1| ycf1
            protein [Atropa belladonna]
          Length = 1880

 Score = 35.0 bits (79), Expect = 0.39
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 12   RMSPQIYFPLIDLSRTVTQVFLFKTNKYSNQVFSNMEIT*SEKSNSKNYVRF 167
            R+   ++  +I++ R  TQ+FL  TNK  ++  SN EI   EK N+K  + F
Sbjct: 1131 RLYINLFLSIINIPRINTQLFLESTNKLIDKYISNNEIN-QEKINNKKKIHF 1181

>sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF 1901)
          Length = 1901

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 12   RMSPQIYFPLIDLSRTVTQVFLFKTNKYSNQVFSNMEIT*SEKSNSKNYVRF 167
            R+   ++  +I++ R  TQ+FL  TNK  ++  SN EI   EK N++  + F
Sbjct: 1154 RLYIDLFLSIINIPRINTQLFLESTNKLIDKYISNNEIN-QEKINNQKKIHF 1204

>pir||A05218 hypothetical protein 1244 - common tobacco chloroplast
          Length = 1244

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 12   RMSPQIYFPLIDLSRTVTQVFLFKTNKYSNQVFSNMEIT*SEKSNSKNYVRF 167
            R+   ++  +I++ R  TQ+FL  TNK  ++  SN EI   EK N++  + F
Sbjct: 1154 RLYIDLFLSIINIPRINTQLFLESTNKLIDKYISNNEIN-QEKINNQKKIHF 1204

>gb|AAA21565.1| protein tyrosine kinase gi|745064|prf||2015390A Janus kinase
          Length = 1099

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44   RFEPHG-YTGVLIQNKQI*QPSILQHGNHLVREKQ**KLCEIRITVRFLGYTYDIQIYQI 220
            R++P G  TG L+  KQ+ Q S+        RE Q  K       V++ G +Y      +
Sbjct: 836  RYDPLGDNTGPLVAVKQL-QHSVPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 894

Query: 221  RKAMVYCPSLNLTDLLQ 271
            R  M Y PS  L DLLQ
Sbjct: 895  RLVMEYLPSGCLRDLLQ 911

>pir||S48053 protein tyrosine kinase - mouse
          Length = 1099

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44   RFEPHG-YTGVLIQNKQI*QPSILQHGNHLVREKQ**KLCEIRITVRFLGYTYDIQIYQI 220
            R++P G  TG L+  KQ+ Q S+        RE Q  K       V++ G +Y      +
Sbjct: 836  RYDPLGDNTGPLVAVKQL-QHSVPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 894

Query: 221  RKAMVYCPSLNLTDLLQ 271
            R  M Y PS  L DLLQ
Sbjct: 895  RLVMEYLPSGCLRDLLQ 911

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,490,400
Number of Sequences: 1393205
Number of extensions: 7153250
Number of successful extensions: 12009
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12001
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GENf034d04 BP059795 1 366 2 MRL014c12_f BP084422 1 464 3 MFB049f04_f BP037561 17 445

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