Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002065A_C02 KMC002065A_c02
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177004.1| ARG1 protein (Altered Response to Gravity); pro... 135 5e-31
dbj|BAB32957.1| putative ARG1 protein (Altered Response to Gravi... 103 2e-21
pir||T00641 hypothetical protein F3I6.4 - Arabidopsis thaliana g... 67 2e-10
ref|NP_173822.2| DNAJ-like heatshock protein; protein id: At1g24... 67 2e-10
dbj|BAC43485.1| unknown protein [Arabidopsis thaliana] gi|289731... 59 5e-08
>ref|NP_177004.1| ARG1 protein (Altered Response to Gravity); protein id:
At1g68370.1, supported by cDNA: gi_4249661 [Arabidopsis
thaliana] gi|25296042|pir||E96707 hypothetical protein
T2E12.8 [imported] - Arabidopsis thaliana
gi|4249662|gb|AAD13758.1| Altered Response to Gravity
[Arabidopsis thaliana]
gi|6714354|gb|AAF26045.1|AC015986_8 ARG1 protein
(Altered Response to Gravity); 32591-35072 [Arabidopsis
thaliana]
Length = 410
Score = 135 bits (339), Expect = 5e-31
Identities = 70/102 (68%), Positives = 87/102 (84%), Gaps = 2/102 (1%)
Frame = -2
Query: 588 SEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKPTNISGSGSNLSNGSSSK 409
+EYRKALAR+QEVT+RYT+EKQ VDELLKQRD IHS+F++VK + SG+NLSNGSSSK
Sbjct: 313 TEYRKALARFQEVTNRYTQEKQTVDELLKQRDTIHSTFSVVK----TPSGNNLSNGSSSK 368
Query: 408 ISGEDSK--GESPGEEGGSDGKDKSGKKKWFNLNLKSSDKRL 289
G++SK G+S GEEGG++ +DKS K+KWFNLNLK SDK+L
Sbjct: 369 AQGDESKGDGDSAGEEGGTENRDKS-KRKWFNLNLKGSDKKL 409
>dbj|BAB32957.1| putative ARG1 protein (Altered Response to Gravity) [Oryza sativa
(japonica cultivar-group)] gi|14495200|dbj|BAB60919.1|
putative ARG1 protein (Altered Response to Gravity)
[Oryza sativa (japonica cultivar-group)]
Length = 403
Score = 103 bits (257), Expect = 2e-21
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Frame = -2
Query: 588 SEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKP-TNISGSGSNLSNGSSS 412
+EYRKALAR+QEVT+RYT+EK+AVD++L++RD IHSSFT + N G+GS+ S +
Sbjct: 314 TEYRKALARFQEVTNRYTQEKEAVDDMLRERDDIHSSFTTERTMVNSVGAGSSSSRYPT- 372
Query: 411 KISGEDSKGESPGEEGGSDGKDKSGKKKWFNLNLKSSDKR 292
ESP E G DGKDKS KKKWFNLNL SDK+
Sbjct: 373 ---------ESP-ENGNIDGKDKSSKKKWFNLNLNRSDKK 402
>pir||T00641 hypothetical protein F3I6.4 - Arabidopsis thaliana
gi|2829865|gb|AAC00573.1| N-terminal region similar to
DNA-J proteins [Arabidopsis thaliana]
Length = 388
Score = 66.6 bits (161), Expect = 2e-10
Identities = 40/119 (33%), Positives = 61/119 (50%), Gaps = 20/119 (16%)
Frame = -2
Query: 588 SEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKPTNISGSGSNLSNGSSSK 409
+EYR+ L ++ ++T RY +E Q++DELLKQR+ IHS++T + S S + + S K
Sbjct: 268 TEYREVLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKRSSSKNRMRKSSFKK 327
Query: 408 ISG---------EDSKGESPGEEGGSDGKDK-----------SGKKKWFNLNLKSSDKR 292
+ E+ + E EE S K+K K KWFNL+LK K+
Sbjct: 328 AAAKAPAPTEQEEEEEEEEEEEEESSRQKNKKPSTCDKSETLKKKSKWFNLHLKLDKKK 386
>ref|NP_173822.2| DNAJ-like heatshock protein; protein id: At1g24120.1, supported by
cDNA: gi_18377834 [Arabidopsis thaliana]
gi|18377835|gb|AAL67104.1| At1g24120/F3I6_4 [Arabidopsis
thaliana]
Length = 436
Score = 66.6 bits (161), Expect = 2e-10
Identities = 40/119 (33%), Positives = 61/119 (50%), Gaps = 20/119 (16%)
Frame = -2
Query: 588 SEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKPTNISGSGSNLSNGSSSK 409
+EYR+ L ++ ++T RY +E Q++DELLKQR+ IHS++T + S S + + S K
Sbjct: 316 TEYREVLVQFTDMTSRYAQEMQSIDELLKQRNEIHSAYTTIPLMKRSSSKNRMRKSSFKK 375
Query: 408 ISG---------EDSKGESPGEEGGSDGKDK-----------SGKKKWFNLNLKSSDKR 292
+ E+ + E EE S K+K K KWFNL+LK K+
Sbjct: 376 AAAKAPAPTEQEEEEEEEEEEEEESSRQKNKKPSTCDKSETLKKKSKWFNLHLKLDKKK 434
>dbj|BAC43485.1| unknown protein [Arabidopsis thaliana] gi|28973195|gb|AAO63922.1|
unknown protein [Arabidopsis thaliana]
Length = 414
Score = 58.9 bits (141), Expect = 5e-08
Identities = 36/101 (35%), Positives = 57/101 (55%), Gaps = 2/101 (1%)
Frame = -2
Query: 588 SEYRKALARYQEVTDRYTKEKQAVDELLKQRDGIHSSFTIVKPTNISGSGSNLSNGSSSK 409
+EY + A++ E+ + T E Q +DELLK+R+ I +++TI PT GS+ S S K
Sbjct: 319 AEYHEVFAQFTEMASKCTGEVQEIDELLKRRNEICAAYTIFPPTK---QGSSKSRSWSKK 375
Query: 408 ISGEDSKGESPGEEGGSDGKDKSG--KKKWFNLNLKSSDKR 292
+ S P EEG +++ G KKKW+N+ L+ K+
Sbjct: 376 ---KSSLLMEPREEGEVAVREEGGVKKKKWYNIQLRQDKKK 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,564,113
Number of Sequences: 1393205
Number of extensions: 11065645
Number of successful extensions: 46323
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 40582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45713
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
