Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002064A_C01 KMC002064A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86278 hypothetical protein F14L17.16 - Arabidopsis thalian... 34 0.92
ref|NP_172891.1| leucine-rich repeat transmembrane protein kinas... 34 0.92
gb|EAA22992.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.0
pir||T13719 calo protein - fruit fly (Drosophila melanogaster) ... 32 3.5
gb|AAD20449.1| pushover [Drosophila melanogaster] 32 3.5
>pir||D86278 hypothetical protein F14L17.16 - Arabidopsis thaliana
gi|7262681|gb|AAF43939.1|AC012188_16 Contains similarity
to a Receptor-like Protein Kinase 5 Precursor from
Arabidopsis thaliana gi|1350783 and contains an
Eukaryotic Protein Kinase PF|00069 domain and Leucine
Rich PF|00560 repeats
Length = 728
Score = 33.9 bits (76), Expect = 0.92
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 194 SSSSQAYDLSFIAFLFLLKSISHTQ 268
SS SQA+ L+F+ FLFLL S+S +Q
Sbjct: 4 SSKSQAFSLTFLLFLFLLPSVSESQ 28
>ref|NP_172891.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g14390.1 [Arabidopsis thaliana]
Length = 747
Score = 33.9 bits (76), Expect = 0.92
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 194 SSSSQAYDLSFIAFLFLLKSISHTQ 268
SS SQA+ L+F+ FLFLL S+S +Q
Sbjct: 4 SSKSQAFSLTFLLFLFLLPSVSESQ 28
>gb|EAA22992.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 418
Score = 32.7 bits (73), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = +1
Query: 22 CDGQTDANLILIFLNTSYIYIYLLDIQVKSWFTRTFCH 135
C+ + N+I I + Y Y YLL I KS + + FC+
Sbjct: 223 CNKNVNKNVIFIIIEIIYSYCYLLRIYNKSIYNKEFCY 260
>pir||T13719 calo protein - fruit fly (Drosophila melanogaster) (fragment)
gi|3893109|emb|CAA76940.1| CALO protein [Drosophila
melanogaster]
Length = 4116
Score = 32.0 bits (71), Expect = 3.5
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 TLHLLKHMISVSLHFFSCLSPSRTHN--TQSKLYNIIIS*KVSLKT 323
TLH LKH + L F L P RT N +++L ++IS + ++T
Sbjct: 103 TLHTLKHCLKSILQLFELLLPHRTANAEVETQLKQLLISSMLDMRT 148
>gb|AAD20449.1| pushover [Drosophila melanogaster]
Length = 4120
Score = 32.0 bits (71), Expect = 3.5
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 2/46 (4%)
Frame = +3
Query: 192 TLHLLKHMISVSLHFFSCLSPSRTHN--TQSKLYNIIIS*KVSLKT 323
TLH LKH + L F L P RT N +++L ++IS + ++T
Sbjct: 1309 TLHTLKHCLKSILQLFELLLPHRTANAEVETQLKQLLISSMLDMRT 1354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,876,659
Number of Sequences: 1393205
Number of extensions: 7744623
Number of successful extensions: 15449
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15449
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
