Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002063A_C01 KMC002063A_c01
(721 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564078.1| expressed protein; protein id: At1g19310.1, sup... 122 7e-27
gb|AAM62942.1| putative RING zinc finger protein [Arabidopsis th... 104 1e-21
ref|NP_179958.1| putative RING zinc finger protein; protein id: ... 104 1e-21
dbj|BAB63606.1| P0403C05.28 [Oryza sativa (japonica cultivar-gro... 94 1e-18
gb|AAO72412.1| unknown protein [Oryza sativa (japonica cultivar-... 70 2e-11
>ref|NP_564078.1| expressed protein; protein id: At1g19310.1, supported by cDNA:
1402., supported by cDNA: gi_16323201 [Arabidopsis
thaliana] gi|25354183|pir||E86326 protein F18O14.3
[imported] - Arabidopsis thaliana
gi|8778447|gb|AAF79455.1|AC025808_37 F18O14.3
[Arabidopsis thaliana] gi|16323202|gb|AAL15335.1|
At1g19310/F18O14_14 [Arabidopsis thaliana]
gi|21436031|gb|AAM51593.1| At1g19310/F18O14_14
[Arabidopsis thaliana] gi|21553370|gb|AAM62463.1|
unknown [Arabidopsis thaliana]
Length = 226
Score = 122 bits (305), Expect = 7e-27
Identities = 67/107 (62%), Positives = 78/107 (72%), Gaps = 6/107 (5%)
Frame = -2
Query: 717 FAHHGFGFTGGLGGFA-PAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAP-- 547
FAHH GF G +GGFA P A+ARFGN TLSAAFGG IPSLFN HGF A MYG A
Sbjct: 116 FAHH-HGFGGFMGGFAAPMASARFGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASG 174
Query: 546 GFPYGFSNSFHG--AHVHRYPLHTG-QGQQDYYLKRLLFFVIFCVVL 415
GFP+GFSN FHG +H+H Y HTG QGQQD++L R+L ++F VV+
Sbjct: 175 GFPHGFSNPFHGGHSHMHSYQRHTGRQGQQDHHL-RILLLIVFVVVV 220
>gb|AAM62942.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 227
Score = 104 bits (259), Expect = 1e-21
Identities = 53/108 (49%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Frame = -2
Query: 717 FAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFP 538
F ++G G GG+ AT RFGNF++ FGG +PSLFNFQ HGFH AT+YG PG+P
Sbjct: 124 FFNYGIGLMGGI--MPMMATTRFGNFSMG--FGGLLPSLFNFQFHGFHDATLYGSTPGYP 179
Query: 537 Y-GFSNSFHGA--HVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIW 403
Y G+ N F G P+ G Q D +LK +LFFV CVV+ IW
Sbjct: 180 YGGYHNGFRGVPPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227
>ref|NP_179958.1| putative RING zinc finger protein; protein id: At2g23780.1,
supported by cDNA: 17402. [Arabidopsis thaliana]
gi|7486265|pir||T02413 probable RING zinc finger protein
[imported] - Arabidopsis thaliana
gi|3152606|gb|AAC17085.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 227
Score = 104 bits (259), Expect = 1e-21
Identities = 53/108 (49%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Frame = -2
Query: 717 FAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFP 538
F ++G G GG+ AT RFGNF++ FGG +PSLFNFQ HGFH AT+YG PG+P
Sbjct: 124 FFNYGIGLMGGI--MPMMATTRFGNFSMG--FGGLLPSLFNFQFHGFHDATLYGSTPGYP 179
Query: 537 Y-GFSNSFHGA--HVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIW 403
Y G+ N F G P+ G Q D +LK +LFFV CVV+ IW
Sbjct: 180 YGGYHNGFRGVPPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227
>dbj|BAB63606.1| P0403C05.28 [Oryza sativa (japonica cultivar-group)]
gi|22535577|dbj|BAC10752.1| OSJNBb0053G03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 560
Score = 94.4 bits (233), Expect = 1e-18
Identities = 52/103 (50%), Positives = 62/103 (59%), Gaps = 1/103 (0%)
Frame = -2
Query: 711 HHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFPYG 532
HH F GG G AP A R+GN+T SAA GG P L +FQ+HGF A YG A GFPYG
Sbjct: 459 HHDPWFMGGAG--APVAGGRWGNYTFSAAIGGLFP-LLSFQVHGFPQAAAYGPAAGFPYG 515
Query: 531 FSNSFHGAHVHRYPLHTGQGQQ-DYYLKRLLFFVIFCVVLAFI 406
+ +SFHG H H +P QGQ D +LK LL V V+ + I
Sbjct: 516 YGHSFHGWHGHGFPHQAPQGQHVDVFLKVLLVLVGVLVIASLI 558
>gb|AAO72412.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 233
Score = 70.5 bits (171), Expect = 2e-11
Identities = 44/103 (42%), Positives = 55/103 (52%), Gaps = 10/103 (9%)
Frame = -2
Query: 684 LGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFPYGF--SNSFHG 511
+G P A AR+GN+ SAAFGG P L +FQ+HGF A Y GF YG+ + FHG
Sbjct: 131 MGTGVPLANARWGNYAFSAAFGGLFPML-SFQVHGFPDANPYAQPAGFHYGYGHGHGFHG 189
Query: 510 AHV--------HRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFI 406
H+ + PL Q Q D YLK LL V F VV + +
Sbjct: 190 GHMGHAAHGVPRQGPLEQPQ-QADIYLKALLIMVGFLVVASLL 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,285,367
Number of Sequences: 1393205
Number of extensions: 14785692
Number of successful extensions: 45071
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 41204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44781
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
