Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002060A_C02 KMC002060A_c02
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF66242.1|AF243180_1 dicyanin [Lycopersicon esculentum] 126 3e-28
sp|Q41001|BCP_PEA Blue copper protein precursor gi|7430875|pir||... 119 4e-26
gb|AAF75824.1|AF101788_1 phytocyanin homolog [Pinus taeda] 116 2e-25
ref|NP_197523.1| blue copper binding protein; protein id: At5g20... 115 5e-25
pir||I39698 blue copper-binding protein, 20K - Arabidopsis thali... 113 2e-24
>gb|AAF66242.1|AF243180_1 dicyanin [Lycopersicon esculentum]
Length = 332
Score = 126 bits (316), Expect = 3e-28
Identities = 63/136 (46%), Positives = 83/136 (60%)
Frame = -1
Query: 663 AYRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKT 484
+Y+ WA+ K+FKVGD LVFN+ HNV V+K YDSCN+TSPI T + P R+ + +
Sbjct: 190 SYQRWANNKSFKVGDTLVFNFVNGTHNVAMVSKASYDSCNTTSPINTISNGPARIRLTNS 249
Query: 483 GAHYFICGVPGHCLGGQKLSINVTGGSSTATPPSSASPSPSPSSSTTPPQDSAAGSLGAA 304
G HY++C P HC GQKL+INVTG TA PS+A+ +PSS T P DS S A
Sbjct: 250 GEHYYMCTFPRHCSLGQKLAINVTGSDVTAPTPSTAA---TPSSPTVPSSDSPVNSPPAP 306
Query: 303 GVFASTVMTITAVFFF 256
A +++ T F
Sbjct: 307 SASAPSLVLATLPLTF 322
Score = 122 bits (305), Expect = 6e-27
Identities = 55/115 (47%), Positives = 79/115 (67%), Gaps = 7/115 (6%)
Frame = -1
Query: 663 AYRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKT 484
+Y TWA+GK+F VGDILVFN+ + +H+V EV+K +DSCN++SPI+ T P +T+
Sbjct: 46 SYSTWAAGKSFVVGDILVFNFRSGSHSVAEVSKGAFDSCNTSSPISISTNGPTNITLSSA 105
Query: 483 GAHYFICGVPGHCLGGQKLSINVTGGSSTATPPSSASP-------SPSPSSSTTP 340
G+HY++C P HC GQKL+INV+G +S A P+ A+P +P+PS S P
Sbjct: 106 GSHYYLCTFPSHCTLGQKLAINVSGSASPAPQPAPATPPTATPVMAPAPSVSVAP 160
>sp|Q41001|BCP_PEA Blue copper protein precursor gi|7430875|pir||T06555 blue
copper-binding protein II - garden pea
gi|562779|emb|CAA80963.1| blue copper protein [Pisum
sativum] gi|1098264|prf||2115352A blue Cu protein
Length = 189
Score = 119 bits (298), Expect = 4e-26
Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Frame = -1
Query: 660 YRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKTG 481
Y TWAS KTF VGD LVFNY A AH V+EV + Y SC S + I+T +T + +KK G
Sbjct: 41 YSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAG 100
Query: 480 AHYFICGVPGHCLGGQKLSINVTGGSSTATPPS---SASPSPSPSSSTTPPQDSAAGSLG 310
HYFICGVPGH GG KLSI V S ++ PS S+S SPSS TP + +
Sbjct: 101 KHYFICGVPGHSTGGMKLSIKVKASSGSSAAPSATPSSSGKGSPSSDDTPAATTTTTTPT 160
Query: 309 AAGVFASTVMT-ITAVFF 259
++T ++ I A+FF
Sbjct: 161 KQNESSATSLSPIVALFF 178
>gb|AAF75824.1|AF101788_1 phytocyanin homolog [Pinus taeda]
Length = 203
Score = 116 bits (291), Expect = 2e-25
Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Frame = -1
Query: 660 YRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKTG 481
Y W +TFK+GDILVF +A + HNV V+K YD C +TSP+ Y T P +T+ TG
Sbjct: 47 YTDWVKARTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPLEKYETGPASITLNTTG 106
Query: 480 AHYFICGVPGHCLGGQKLSINVTGGSSTATPPSSASPSP--SPSSSTTPPQDSAAGSLGA 307
HY+IC V GHC GQK+SI V S+ A P SS SP+P SP++S + P ++ S
Sbjct: 107 HHYYICAVSGHCAAGQKVSIKV---STAAAPGSSPSPAPVSSPATSASSPAPGSSTSSAT 163
Query: 306 AGVFAS 289
AS
Sbjct: 164 PNSSAS 169
>ref|NP_197523.1| blue copper binding protein; protein id: At5g20230.1, supported by
cDNA: 7767., supported by cDNA: gi_15450626 [Arabidopsis
thaliana] gi|21264375|sp|Q07488|BCB_ARATH Blue copper
protein precursor (Blue copper binding protein) (AtBCB)
gi|11357200|pir||T51838 blue copper binding protein
homolog [imported] - Arabidopsis thaliana
gi|3766248|emb|CAA77089.1| blue copper binding-like
protein [Arabidopsis thaliana]
gi|6468187|dbj|BAA86999.1| blue copper binding protein
[Arabidopsis thaliana] gi|14334626|gb|AAK59491.1|
putative blue copper binding protein [Arabidopsis
thaliana] gi|15450627|gb|AAK96585.1| AT5g20230/F5O24_120
[Arabidopsis thaliana] gi|21595207|gb|AAM66081.1| blue
copper binding protein [Arabidopsis thaliana]
gi|23296684|gb|AAN13146.1| putative blue copper binding
protein [Arabidopsis thaliana]
Length = 196
Score = 115 bits (288), Expect = 5e-25
Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 22/155 (14%)
Frame = -1
Query: 660 YRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKTG 481
Y TWA+GKTF+VGD L F++AA H+V V++ +++C PI+ T PPV++ + TG
Sbjct: 42 YTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTG 101
Query: 480 AHYFICGVPGHCLGGQKLSINVTGGSST--ATPPSSASP--------------------S 367
YFIC V HC GQKLSI V +T ATP + A+P +
Sbjct: 102 PQYFICTVGDHCRFGQKLSITVVAAGATGGATPGAGATPAPGSTPSTGGTTPPTAGGTTT 161
Query: 366 PSPSSSTTPPQDSAAGSLGAAGVFASTVMTITAVF 262
PS SS TT P +AA SLG A + V + A+F
Sbjct: 162 PSGSSGTTTPAGNAASSLGGATFLVAFVSAVVALF 196
>pir||I39698 blue copper-binding protein, 20K - Arabidopsis thaliana
gi|16203|emb|CAA78771.1| blue copper-binding protein
[Arabidopsis thaliana] gi|739987|prf||2004275A blue
copper-binding protein
Length = 196
Score = 113 bits (283), Expect = 2e-24
Identities = 64/155 (41%), Positives = 87/155 (55%), Gaps = 22/155 (14%)
Frame = -1
Query: 660 YRTWASGKTFKVGDILVFNYAASAHNVEEVTKPKYDSCNSTSPIATYTTPPVRVTIKKTG 481
Y +WA+GKTF+VGD L F++AA H+V V++ +++C PI+ T PPV++ + TG
Sbjct: 42 YTSWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTG 101
Query: 480 AHYFICGVPGHCLGGQKLSINV-----TGGSST---ATPPSSASPS-------------- 367
YFIC V HC GQKLSI V TGG++ ATP ++PS
Sbjct: 102 PQYFICTVGDHCRFGQKLSITVVAAGATGGATLGAGATPALGSTPSTGGTTPPTAGGTTT 161
Query: 366 PSPSSSTTPPQDSAAGSLGAAGVFASTVMTITAVF 262
PS SS TT P +AA SLG A + V + A+F
Sbjct: 162 PSGSSGTTTPAGNAASSLGGATFLVAFVSAVVALF 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,556,285
Number of Sequences: 1393205
Number of extensions: 14276086
Number of successful extensions: 124871
Number of sequences better than 10.0: 536
Number of HSP's better than 10.0 without gapping: 82039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118565
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
