Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002058A_C02 KMC002058A_c02
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171963.1| putative K+ channel, beta subunit; protein id: ... 189 2e-47
gb|AAA87294.1| K+ channel protein 184 1e-45
emb|CAA12646.1| potassium channel beta subunit [Egeria densa] 183 2e-45
pir||T07394 probable potassium channel beta chain KB1 - potato g... 179 2e-44
pir||T03384 probable potassium channel beta chain - rice gi|1197... 176 3e-43
>ref|NP_171963.1| putative K+ channel, beta subunit; protein id: At1g04690.1,
supported by cDNA: 23300., supported by cDNA:
gi_1063414, supported by cDNA: gi_15292774, supported by
cDNA: gi_20259254, supported by cDNA: gi_3126867
[Arabidopsis thaliana] gi|25316224|pir||T52133 potassium
channel beta subunit homolog [imported] - Arabidopsis
thaliana gi|2494112|gb|AAB80621.1| Match to Arabidopsis
ATHKCP (gb|L40948). ESTs gb|ATTS0764, gb|R90646,
gb|AA389809, gb|ATTS2615 come from this gene.
[Arabidopsis thaliana] gi|3126868|gb|AAC15999.1|
potassium channel beta subunit homolog [Arabidopsis
thaliana] gi|15292775|gb|AAK92756.1| putative K+
channel, beta subunit [Arabidopsis thaliana]
gi|20259255|gb|AAM14363.1| putative potassium channel
beta subunit [Arabidopsis thaliana]
Length = 328
Score = 189 bits (481), Expect = 2e-47
Identities = 94/108 (87%), Positives = 102/108 (94%)
Frame = -2
Query: 675 KGAIPSDSRFALENYKNLAARSLVDDVLKKVDGLKPIADELGVPLAQLAIAWCANNPNVS 496
KGAIPSDSRFALENYKNLA RSLVDDVL+KV GLKPIADELGV LAQLAIAWCA+NPNVS
Sbjct: 221 KGAIPSDSRFALENYKNLANRSLVDDVLRKVSGLKPIADELGVTLAQLAIAWCASNPNVS 280
Query: 495 SVICGATKESQIQENMKAIDVIPLLTPAVMEKIENVVQSKPKRPDSYR 352
SVI GAT+ESQIQENMKA+DVIPLLTP V++KIE V+QSKPKRP+SYR
Sbjct: 281 SVITGATRESQIQENMKAVDVIPLLTPIVLDKIEQVIQSKPKRPESYR 328
>gb|AAA87294.1| K+ channel protein
Length = 328
Score = 184 bits (467), Expect = 1e-45
Identities = 92/108 (85%), Positives = 100/108 (92%)
Frame = -2
Query: 675 KGAIPSDSRFALENYKNLAARSLVDDVLKKVDGLKPIADELGVPLAQLAIAWCANNPNVS 496
KGAIPSDSRFALENYKNLA RSLVDDVL+KV GLKPIA ELGV LAQLAIAWCA+NPNVS
Sbjct: 221 KGAIPSDSRFALENYKNLANRSLVDDVLRKVSGLKPIAGELGVTLAQLAIAWCASNPNVS 280
Query: 495 SVICGATKESQIQENMKAIDVIPLLTPAVMEKIENVVQSKPKRPDSYR 352
SVI GAT+ SQIQENMKA+DVIPLLTP V++KIE V+QSKPKRP+SYR
Sbjct: 281 SVITGATRGSQIQENMKAVDVIPLLTPIVLDKIEQVIQSKPKRPESYR 328
>emb|CAA12646.1| potassium channel beta subunit [Egeria densa]
Length = 328
Score = 183 bits (465), Expect = 2e-45
Identities = 92/108 (85%), Positives = 102/108 (94%)
Frame = -2
Query: 675 KGAIPSDSRFALENYKNLAARSLVDDVLKKVDGLKPIADELGVPLAQLAIAWCANNPNVS 496
KG IP+DSRFALENYKNLA+R+LVDD+L+KV+GLKPIA ELGVPLAQLAIAWCA+NP+VS
Sbjct: 221 KGNIPADSRFALENYKNLASRTLVDDILRKVNGLKPIAAELGVPLAQLAIAWCASNPHVS 280
Query: 495 SVICGATKESQIQENMKAIDVIPLLTPAVMEKIENVVQSKPKRPDSYR 352
SVI GATKESQI ENMKAIDVIPLLTP V+EKIE VVQSKPKRP+SYR
Sbjct: 281 SVITGATKESQIIENMKAIDVIPLLTPEVLEKIEAVVQSKPKRPESYR 328
>pir||T07394 probable potassium channel beta chain KB1 - potato
gi|3402279|emb|CAA04451.1| putative beta-subunit of K+
channels [Solanum tuberosum]
Length = 330
Score = 179 bits (455), Expect = 2e-44
Identities = 90/107 (84%), Positives = 99/107 (92%)
Frame = -2
Query: 672 GAIPSDSRFALENYKNLAARSLVDDVLKKVDGLKPIADELGVPLAQLAIAWCANNPNVSS 493
G IP DSRF+LENYKNLA+RSLVDDVL+KV+GLKPIA+ELGVPL QLAIAWCA NPNVSS
Sbjct: 224 GNIPPDSRFSLENYKNLASRSLVDDVLRKVNGLKPIAEELGVPLPQLAIAWCAANPNVSS 283
Query: 492 VICGATKESQIQENMKAIDVIPLLTPAVMEKIENVVQSKPKRPDSYR 352
VI GATKE QIQ+NMKAI+VIP+LTPAVMEKIE +VQSKPKR DSYR
Sbjct: 284 VITGATKEYQIQDNMKAINVIPMLTPAVMEKIEAIVQSKPKRQDSYR 330
>pir||T03384 probable potassium channel beta chain - rice
gi|1197587|gb|AAC50046.1| potassium channel beta subunit
protein [Oryza sativa]
Length = 326
Score = 176 bits (445), Expect = 3e-43
Identities = 89/108 (82%), Positives = 98/108 (90%)
Frame = -2
Query: 675 KGAIPSDSRFALENYKNLAARSLVDDVLKKVDGLKPIADELGVPLAQLAIAWCANNPNVS 496
KG IP+DSRFALENYKNLA RSLVDD L+KV+GLKPIA ELGV LAQLAIAWCA+NPNVS
Sbjct: 219 KGNIPADSRFALENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVS 278
Query: 495 SVICGATKESQIQENMKAIDVIPLLTPAVMEKIENVVQSKPKRPDSYR 352
SVI GATKE+QI ENMKA+DVIPLLTP V++KIE VVQSKPKR +SYR
Sbjct: 279 SVITGATKENQIVENMKALDVIPLLTPEVVDKIEAVVQSKPKRTESYR 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,646,932
Number of Sequences: 1393205
Number of extensions: 11902021
Number of successful extensions: 29437
Number of sequences better than 10.0: 274
Number of HSP's better than 10.0 without gapping: 28618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29418
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
