Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002056A_C01 KMC002056A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566601.1| Expressed protein; protein id: At3g18215.1, sup... 54 4e-07
ref|NP_197848.1| putative protein; protein id: At5g24600.1 [Arab... 32 2.3
gb|EAA35891.1| hypothetical protein [Neurospora crassa] 31 3.9
ref|NP_812367.1| S-adenosyl-methyltransferase mraW [Bacteroides ... 30 6.7
gb|EAA33701.1| hypothetical protein [Neurospora crassa] 30 8.8
>ref|NP_566601.1| Expressed protein; protein id: At3g18215.1, supported by cDNA:
gi_15810370, supported by cDNA: gi_20259212 [Arabidopsis
thaliana] gi|9294078|dbj|BAB02035.1|
emb|CAA16536.1~gene_id:MRC8.22~similar to unknown
protein [Arabidopsis thaliana]
gi|15810371|gb|AAL07073.1| unknown protein [Arabidopsis
thaliana] gi|20259213|gb|AAM14322.1| unknown protein
[Arabidopsis thaliana]
Length = 244
Score = 53.9 bits (128), Expect = 4e-07
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = -1
Query: 446 IPMFACCCLTPFTLYFLDTTAKITRELHSNSFKKDRGTHDVESVVEPDYHPL 291
IPMF CCC+ LYFLDTT TR LHS SF++ + D E +E H L
Sbjct: 195 IPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADSMDGE--IESAVHTL 244
>ref|NP_197848.1| putative protein; protein id: At5g24600.1 [Arabidopsis thaliana]
gi|10177860|dbj|BAB11212.1|
gene_id:K18P6.13~pir||T04500~similar to unknown protein
[Arabidopsis thaliana]
Length = 248
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/53 (39%), Positives = 25/53 (46%)
Frame = -1
Query: 446 IPMFACCCLTPFTLYFLDTTAKITRELHSNSFKKDRGTHDVESVVEPDYHPLA 288
IPMF CC+ +LYFLD T +S K G D E EP+ LA
Sbjct: 204 IPMFITCCVLVCSLYFLDLT--------FDSMKCSVGAADAE---EPEIRSLA 245
>gb|EAA35891.1| hypothetical protein [Neurospora crassa]
Length = 1283
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 242 LTIHDPHLCFKPNCHQLKDDNQAPLQIQHHEFPCPS*TSC 361
L+I +C KPN HQ +D APL + + FP P TSC
Sbjct: 92 LSIRAADVC-KPNPHQQHNDTDAPL-VLNLRFPSPIRTSC 129
>ref|NP_812367.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron
VPI-5482] gi|29340770|gb|AAO78561.1|
S-adenosyl-methyltransferase mraW [Bacteroides
thetaiotaomicron VPI-5482]
Length = 304
Score = 30.0 bits (66), Expect = 6.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 1 GKIRKLTNQEKILQVLA*TVYIDILQALEALIDRLHRATRSLTPTKSLLLLGYH 162
G+ R+ K+ Q L I++ Q +EAL + L AT +L P L+++ YH
Sbjct: 191 GREREKKELAKVFQALR----IEVNQEMEALKEMLAAATEALKPGGRLVVITYH 240
>gb|EAA33701.1| hypothetical protein [Neurospora crassa]
Length = 592
Score = 29.6 bits (65), Expect = 8.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 436 LLVAA*HHSLCTSWIQQLKSQGNFTATRSRRTGE 335
LL+A H C SW+QQL+ G R RR G+
Sbjct: 466 LLLAQAIHDYCRSWVQQLRI-GQLKRARKRRRGK 498
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,207,650
Number of Sequences: 1393205
Number of extensions: 6038353
Number of successful extensions: 9405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9405
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
