Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002055A_C01 KMC002055A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196735.1| arabinogalactan-protein (AGP15); protein id: At... 58 5e-08
pir||T10188 gibberellin-responsive protein CRG16 - cucumber gi|1... 56 2e-07
gb|AAN77148.1| fiber protein Fb7 [Gossypium barbadense] 51 8e-06
ref|NP_055885.1| KIAA0853 protein [Homo sapiens] gi|12053007|emb... 44 7e-04
emb|CAD38544.1| hypothetical protein [Homo sapiens] 44 7e-04
>ref|NP_196735.1| arabinogalactan-protein (AGP15); protein id: At5g11740.1
[Arabidopsis thaliana] gi|11358218|pir||T48533
hypothetical protein T22P22.130 - Arabidopsis thaliana
gi|7573388|emb|CAB87692.1| putative protein [Arabidopsis
thaliana] gi|10880507|gb|AAG24283.1|AF195896_1
arabinogalactan protein [Arabidopsis thaliana]
gi|14030655|gb|AAK53002.1|AF375418_1
AT5g11740/T22P22_130 [Arabidopsis thaliana]
gi|22136564|gb|AAM91068.1| AT5g11740/T22P22_130
[Arabidopsis thaliana]
Length = 61
Score = 58.2 bits (139), Expect = 5e-08
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = -3
Query: 442 MASTRVMLLATMSVLAAVISVAAAAEAPAPSPASPASAVSPSFAAGLLAAVAALAFGSSL 263
MA ++ ++ M V+ +V++ +A +EAPAPSP S +SA+S SF + +AAVAAL FGS+L
Sbjct: 1 MAISKASIVVLMMVIISVVA-SAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSAL 59
Query: 262 RI 257
RI
Sbjct: 60 RI 61
>pir||T10188 gibberellin-responsive protein CRG16 - cucumber
gi|1669529|dbj|BAA08394.1| CRG16 [Cucumis sativus]
gi|1669539|dbj|BAA11428.1| CRG16 [Cucumis sativus]
Length = 65
Score = 56.2 bits (134), Expect = 2e-07
Identities = 31/64 (48%), Positives = 45/64 (69%), Gaps = 2/64 (3%)
Frame = -3
Query: 445 LMASTRVMLLATMSVLAAVISVAAA--AEAPAPSPASPASAVSPSFAAGLLAAVAALAFG 272
+ A ++V +A ++VL AV+SVA A AE+PAP PASPA++V PS + + A AL FG
Sbjct: 1 MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60
Query: 271 SSLR 260
S+L+
Sbjct: 61 SALK 64
>gb|AAN77148.1| fiber protein Fb7 [Gossypium barbadense]
Length = 63
Score = 50.8 bits (120), Expect = 8e-06
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = -3
Query: 442 MASTRVMLLATMSVLAAVISVAAAAEAPAPSPASPASAVSPSFAAGLLAAVA-ALAFGSS 266
MA + L+ + + A++ A AA+APAPSP S A ++SP F + +AA A AL FGS
Sbjct: 1 MAPSMSTLMVVLVAVCALMGSAIAADAPAPSPTSGAGSISPPFVSVSVAAAAMALLFGSR 60
Query: 265 LRI 257
LRI
Sbjct: 61 LRI 63
>ref|NP_055885.1| KIAA0853 protein [Homo sapiens] gi|12053007|emb|CAB66679.1|
hypothetical protein [Homo sapiens]
Length = 1170
Score = 44.3 bits (103), Expect = 7e-04
Identities = 43/150 (28%), Positives = 65/150 (42%), Gaps = 2/150 (1%)
Frame = +1
Query: 16 EIDYVPETMIDHNHSNNALKSQDNKIQKSTYIVSTATSTI*KQRKRERERERDL-YTTTN 192
E D P + I H N+ L+ + + ++ V ++R RERER+R+
Sbjct: 242 ERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERERDRERERERER 301
Query: 193 QVS*ASTKNHATNRDNPSCKLRSGEKIQRREQ-RRRQGDRRRRTARQRTPERRG*EPEPQ 369
+ K R+ + R EK + RE+ R R DR R R+R E+ E E +
Sbjct: 302 ERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREK---ERERE 358
Query: 370 RQQRRR*RRRAPTLWREASL*WKP*ERERD 459
R++R R R R RE ERER+
Sbjct: 359 REERERERERERERERER-------ERERE 381
Score = 42.7 bits (99), Expect = 0.002
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 139 KQRKRERERERDLYTTTNQVS*ASTKNHATNRDNPSCKLRSGEKIQRREQRRRQGDRRRR 318
++R+RERE+ERD + ++H R+ + R E+ + RE+R R+ +R R
Sbjct: 319 REREREREKERDRERDRD-------RDHDRERERERERDREKEREREREERERERERERE 371
Query: 319 TARQRTPER-RG*EPEPQRQQRR 384
R+R ER R E + +R+++R
Sbjct: 372 RERERERERERARERDKERERQR 394
Score = 36.2 bits (82), Expect = 0.20
Identities = 32/106 (30%), Positives = 45/106 (42%)
Frame = +1
Query: 142 QRKRERERERDLYTTTNQVS*ASTKNHATNRDNPSCKLRSGEKIQRREQRRRQGDRRRRT 321
+R R RERD ++ +N RD + R RR++R R+ DR R
Sbjct: 234 ERDRRDNRERDQRPSSPIRH--QGRNDELERDERREERRVDRVDDRRDERARERDRERER 291
Query: 322 ARQRTPERRG*EPEPQRQQRRR*RRRAPTLWREASL*WKP*ERERD 459
R+R ER + ++R R RA RE K +RERD
Sbjct: 292 DRERERERERERDREREKERELERERARERERERE---KERDRERD 334
>emb|CAD38544.1| hypothetical protein [Homo sapiens]
Length = 796
Score = 44.3 bits (103), Expect = 7e-04
Identities = 43/150 (28%), Positives = 65/150 (42%), Gaps = 2/150 (1%)
Frame = +1
Query: 16 EIDYVPETMIDHNHSNNALKSQDNKIQKSTYIVSTATSTI*KQRKRERERERDL-YTTTN 192
E D P + I H N+ L+ + + ++ V ++R RERER+R+
Sbjct: 461 ERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERERDRERERERER 520
Query: 193 QVS*ASTKNHATNRDNPSCKLRSGEKIQRREQ-RRRQGDRRRRTARQRTPERRG*EPEPQ 369
+ K R+ + R EK + RE+ R R DR R R+R E+ E E +
Sbjct: 521 ERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREK---ERERE 577
Query: 370 RQQRRR*RRRAPTLWREASL*WKP*ERERD 459
R++R R R R RE ERER+
Sbjct: 578 REERERERERERERERER-------ERERE 600
Score = 42.7 bits (99), Expect = 0.002
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 139 KQRKRERERERDLYTTTNQVS*ASTKNHATNRDNPSCKLRSGEKIQRREQRRRQGDRRRR 318
++R+RERE+ERD + ++H R+ + R E+ + RE+R R+ +R R
Sbjct: 538 REREREREKERDRERDRD-------RDHDRERERERERDREKEREREREERERERERERE 590
Query: 319 TARQRTPER-RG*EPEPQRQQRR 384
R+R ER R E + +R+++R
Sbjct: 591 RERERERERERARERDKERERQR 613
Score = 36.2 bits (82), Expect = 0.20
Identities = 32/106 (30%), Positives = 45/106 (42%)
Frame = +1
Query: 142 QRKRERERERDLYTTTNQVS*ASTKNHATNRDNPSCKLRSGEKIQRREQRRRQGDRRRRT 321
+R R RERD ++ +N RD + R RR++R R+ DR R
Sbjct: 453 ERDRRDNRERDQRPSSPIRH--QGRNDELERDERREERRVDRVDDRRDERARERDRERER 510
Query: 322 ARQRTPERRG*EPEPQRQQRRR*RRRAPTLWREASL*WKP*ERERD 459
R+R ER + ++R R RA RE K +RERD
Sbjct: 511 DRERERERERERDREREKERELERERARERERERE---KERDRERD 553
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,258,188
Number of Sequences: 1393205
Number of extensions: 9092086
Number of successful extensions: 108476
Number of sequences better than 10.0: 1518
Number of HSP's better than 10.0 without gapping: 66013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97199
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
