Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002052A_C02 KMC002052A_c02
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia ol... 218 8e-56
gb|AAM65920.1| putative ribose 5-phosphate isomerase [Arabidopsi... 215 5e-55
ref|NP_187130.1| putative ribose 5-phosphate isomerase; protein ... 214 1e-54
ref|NP_178238.1| putative ribose 5-phosphate isomerase; protein ... 159 2e-38
gb|AAM64621.1| putative ribose 5-phosphate isomerase [Arabidopsi... 151 9e-36
>gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia oleracea]
Length = 289
Score = 218 bits (554), Expect = 8e-56
Identities = 110/136 (80%), Positives = 117/136 (85%)
Frame = -1
Query: 670 GRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFK 491
GRGGALLREKMVEAASDKF+VVVDDTKLV GLGGS LAMPVEVVQFCWKYNL RLQE+FK
Sbjct: 154 GRGGALLREKMVEAASDKFIVVVDDTKLVDGLGGSRLAMPVEVVQFCWKYNLKRLQEIFK 213
Query: 490 EEGVDAKLRLDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISALEGVVEHGLFLNMA 311
E G +AKLR++ PYVTDNSNYIVDLYF T I+DA AAG EISALEGVVEHGLFL MA
Sbjct: 214 ELGCEAKLRMEGDSSPYVTDNSNYIVDLYFPTSIKDAEAAGREISALEGVVEHGLFLGMA 273
Query: 310 TSVIIAAKDGVEVKNK 263
+ VIIA K GV VK K
Sbjct: 274 SEVIIAGKTGVSVKTK 289
>gb|AAM65920.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]
Length = 276
Score = 215 bits (547), Expect = 5e-55
Identities = 105/136 (77%), Positives = 117/136 (85%)
Frame = -1
Query: 670 GRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFK 491
GRGGALLREKMVEA +DKF+VV DDTKLV+GLGGSGLAMPVEVVQFCW +NL RLQELFK
Sbjct: 141 GRGGALLREKMVEAVADKFIVVADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQELFK 200
Query: 490 EEGVDAKLRLDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISALEGVVEHGLFLNMA 311
E G ++KLR+D GKPYVTDNSNYI+DLYFKTP++D AA EI +GVVEHGLFL MA
Sbjct: 201 EFGCESKLRVDGDGKPYVTDNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMA 260
Query: 310 TSVIIAAKDGVEVKNK 263
TSVIIA K+GVEV K
Sbjct: 261 TSVIIAGKNGVEVMTK 276
>ref|NP_187130.1| putative ribose 5-phosphate isomerase; protein id: At3g04790.1,
supported by cDNA: 6349., supported by cDNA: gi_15027856
[Arabidopsis thaliana]
gi|6175179|gb|AAF04905.1|AC011437_20 putative ribose
5-phosphate isomerase [Arabidopsis thaliana]
gi|12322865|gb|AAG51427.1|AC009465_27 putative ribose
5-phosphate isomerase; 91580-90750 [Arabidopsis
thaliana] gi|15027857|gb|AAK76459.1| putative ribose
5-phosphate isomerase [Arabidopsis thaliana]
gi|23296784|gb|AAN13169.1| putative ribose 5-phosphate
isomerase [Arabidopsis thaliana]
Length = 276
Score = 214 bits (544), Expect = 1e-54
Identities = 104/136 (76%), Positives = 117/136 (85%)
Frame = -1
Query: 670 GRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFK 491
GRGGALLREKMVEA +DKF+VV DDTKLV+GLGGSGLAMPVEVVQFCW +NL RLQ+LFK
Sbjct: 141 GRGGALLREKMVEAVADKFIVVADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFK 200
Query: 490 EEGVDAKLRLDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISALEGVVEHGLFLNMA 311
E G ++KLR+D GKPYVTDNSNYI+DLYFKTP++D AA EI +GVVEHGLFL MA
Sbjct: 201 EFGCESKLRVDGDGKPYVTDNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMA 260
Query: 310 TSVIIAAKDGVEVKNK 263
TSVIIA K+GVEV K
Sbjct: 261 TSVIIAGKNGVEVMTK 276
>ref|NP_178238.1| putative ribose 5-phosphate isomerase; protein id: At2g01290.1,
supported by cDNA: gi_15809809, supported by cDNA:
gi_17978866 [Arabidopsis thaliana]
gi|6226027|sp|Q9ZU38|RPIA_ARATH Probable ribose
5-phosphate isomerase (Phosphoriboisomerase)
gi|25329401|pir||H84422 probable ribose 5-phosphate
isomerase [imported] - Arabidopsis thaliana
gi|4262236|gb|AAD14529.1| putative ribose 5-phosphate
isomerase [Arabidopsis thaliana]
gi|15809810|gb|AAL06833.1| At2g01290/F10A8.17
[Arabidopsis thaliana] gi|17978867|gb|AAL47405.1|
At2g01290/F10A8.17 [Arabidopsis thaliana]
Length = 265
Score = 159 bits (403), Expect = 2e-38
Identities = 77/136 (56%), Positives = 102/136 (74%)
Frame = -1
Query: 670 GRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFK 491
GRGG+LLREKM+E AS KFVV+VDD+K+V +GGS LA+PVE+V FCWK+ +L+ L +
Sbjct: 129 GRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLE 188
Query: 490 EEGVDAKLRLDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISALEGVVEHGLFLNMA 311
G +A LRL E GK +VTDN NYIVD++ + + D A I L GVVEHG+FL+MA
Sbjct: 189 GYGCEANLRLGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMA 248
Query: 310 TSVIIAAKDGVEVKNK 263
++VIIA + GV++KNK
Sbjct: 249 STVIIAGELGVKIKNK 264
>gb|AAM64621.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]
Length = 267
Score = 151 bits (381), Expect = 9e-36
Identities = 78/141 (55%), Positives = 99/141 (69%), Gaps = 5/141 (3%)
Frame = -1
Query: 670 GRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLTRLQELFK 491
GRGG+LLREKM+E AS KFVV+VD++KLV +GGSGLA+PVEVV FC + +L+ELF+
Sbjct: 125 GRGGSLLREKMIEGASKKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFR 184
Query: 490 EEGVDAKLRL-----DESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISALEGVVEHGL 326
+ G AKLR+ E P VTDN NY+VDLY + I D A I GVVEHG+
Sbjct: 185 DSGCVAKLRMKIGSNGEEAAPAVTDNGNYVVDLYLERDIGDLEVASEAILRFPGVVEHGM 244
Query: 325 FLNMATSVIIAAKDGVEVKNK 263
FL MAT++I+A K GV VK++
Sbjct: 245 FLGMATTLIVAGKFGVTVKDR 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,623,206
Number of Sequences: 1393205
Number of extensions: 13577361
Number of successful extensions: 64381
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 54939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63156
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
