Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002051A_C01 KMC002051A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_572932.1| CG11071-PA [Drosophila melanogaster] gi|7292941... 32 0.003
ref|NP_572403.1| CG12155-PA [Drosophila melanogaster] gi|7290826... 31 0.005
sp|P09346|KNOB_PLAFG KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN PREC... 40 0.031
pir||A54495 knob protein precursor - malaria parasite (Plasmodiu... 40 0.031
prf||1413318A knob protein 40 0.031
>ref|NP_572932.1| CG11071-PA [Drosophila melanogaster] gi|7292941|gb|AAF48332.1|
CG11071-PA [Drosophila melanogaster]
Length = 802
Score = 31.6 bits (70), Expect(2) = 0.003
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 258 HHHHHHHHMYIFQASQAR 311
HHHHHHHH + Q QA+
Sbjct: 571 HHHHHHHHHHQQQHHQAQ 588
Score = 30.8 bits (68), Expect(2) = 0.003
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 207 THDTCQQHFIVLDLLKLHHHHHHHH 281
T+ + H + D HHHHHHHH
Sbjct: 553 TNKRSRLHHLETDPSYPHHHHHHHH 577
>ref|NP_572403.1| CG12155-PA [Drosophila melanogaster] gi|7290826|gb|AAF46269.1|
CG12155-PA [Drosophila melanogaster]
gi|17863012|gb|AAL39983.1| SD08447p [Drosophila
melanogaster]
Length = 555
Score = 30.8 bits (68), Expect(2) = 0.005
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 258 HHHHHHHHMYIFQASQARIKSSE 326
HHHHHHHH S + I+ S+
Sbjct: 233 HHHHHHHHQSQHDGSISSIELSQ 255
Score = 30.8 bits (68), Expect(2) = 0.005
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 174 TYKILKYHGNLTHDTCQQHFIVLDLLKLHHHHHHHH 281
T+ + Y ++ DT QH HHHHH HH
Sbjct: 196 TFILTAYEEGVSDDTVSQHH--------HHHHHGHH 223
>sp|P09346|KNOB_PLAFG KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN PRECURSOR (KAHRP) (KP)
gi|84224|pir||A28412 histidine-rich protein precursor -
malaria parasite (Plasmodium falciparum)
gi|160358|gb|AAA29629.1| knob-associated histidine rich
protein
Length = 634
Score = 39.7 bits (91), Expect = 0.031
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 192 YHGNLTHDTCQQHFIVLDLLKLHHHHHHHHMYIFQASQARIKSSECNKEKGKGLI*TKLF 371
+HG + H Q H V + HHHHHHHH Q +++ + N + ++ T++F
Sbjct: 86 HHGEVNHQAPQVHQQVHGQDQAHHHHHHHH---HQLQPQQLQGTVANPPSNEPVVKTQVF 142
>pir||A54495 knob protein precursor - malaria parasite (Plasmodium falciparum)
(strain FCR-3 Gambia) gi|160364|gb|AAA29632.1| knob
protein precursor
Length = 634
Score = 39.7 bits (91), Expect = 0.031
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 192 YHGNLTHDTCQQHFIVLDLLKLHHHHHHHHMYIFQASQARIKSSECNKEKGKGLI*TKLF 371
+HG + H Q H V + HHHHHHHH Q +++ + N + ++ T++F
Sbjct: 86 HHGEVNHQAPQVHQQVHGQDQAHHHHHHHH---HQLQPQQLQGTVANPPSNEPVVKTQVF 142
>prf||1413318A knob protein
Length = 634
Score = 39.7 bits (91), Expect = 0.031
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 192 YHGNLTHDTCQQHFIVLDLLKLHHHHHHHHMYIFQASQARIKSSECNKEKGKGLI*TKLF 371
+HG + H Q H V + HHHHHHHH Q +++ + N + ++ T++F
Sbjct: 86 HHGEVNHQAPQVHQQVHGQDQAHHHHHHHH---HQLQPQQLQGTVANPPSNEPVVKTQVF 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,753,548
Number of Sequences: 1393205
Number of extensions: 12672057
Number of successful extensions: 72580
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 41291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61694
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
