Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002050A_C01 KMC002050A_c01
(996 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK29409.1|AF346305_1 S-adenosyl-L-methionine synthetase [Ela... 401 e-122
gb|AAK29410.1|AF346306_1 S-adenosyl-L-methionine synthetase [Ela... 395 e-121
sp|P43280|METK_LYCES S-adenosylmethionine synthetase 1 (Methioni... 389 e-119
sp|Q96551|METK_CATRO S-adenosylmethionine synthetase 1 (Methioni... 394 e-119
gb|AAK71235.1| S-adenosylmethionine synthetase [Brassica juncea] 390 e-119
>gb|AAK29409.1|AF346305_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata]
Length = 393
Score = 401 bits (1030), Expect(3) = e-122
Identities = 194/200 (97%), Positives = 197/200 (98%)
Frame = -2
Query: 995 TCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVI 816
TC WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV+ND+IAADLKEHVIKPVI
Sbjct: 160 TCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 219
Query: 815 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 636
PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD
Sbjct: 220 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 279
Query: 635 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKE 456
RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTG IPDKEIL IVKE
Sbjct: 280 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGQIPDKEILNIVKE 339
Query: 455 NFDFRPGMMTINLDLKRGGN 396
NFDFRPGM+TINLDLKRGGN
Sbjct: 340 NFDFRPGMITINLDLKRGGN 359
Score = 43.5 bits (101), Expect(3) = e-122
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 348 PDFTWEVVKPLKWEKPQ 298
PDFTWE+VKPLKWEKPQ
Sbjct: 376 PDFTWEIVKPLKWEKPQ 392
Score = 39.3 bits (90), Expect(3) = e-122
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -3
Query: 409 RGVETRFIKTAAYGHFGRDDP 347
RG RF+KTA YGHFGRDDP
Sbjct: 356 RGGNGRFLKTAGYGHFGRDDP 376
>gb|AAK29410.1|AF346306_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata]
Length = 393
Score = 395 bits (1016), Expect(3) = e-121
Identities = 189/200 (94%), Positives = 197/200 (98%)
Frame = -2
Query: 995 TCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVI 816
TC WLRPDGKTQVTVEYYN+ GAMVPVRVHTVLISTQHDETV+ND+IAADLKEHVIKPV+
Sbjct: 160 TCPWLRPDGKTQVTVEYYNDKGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVV 219
Query: 815 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 636
PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD
Sbjct: 220 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 279
Query: 635 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKE 456
RSGAYIVRQAAKSIVANGLARRC+VQVSYAIGVP+PLSVFVDSYGTG IPDKEIL+IVKE
Sbjct: 280 RSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGKIPDKEILKIVKE 339
Query: 455 NFDFRPGMMTINLDLKRGGN 396
NFDFRPGM+TINLDLKRGGN
Sbjct: 340 NFDFRPGMITINLDLKRGGN 359
Score = 43.5 bits (101), Expect(3) = e-121
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 348 PDFTWEVVKPLKWEKPQ 298
PDFTWE+VKPLKWEKPQ
Sbjct: 376 PDFTWEIVKPLKWEKPQ 392
Score = 41.2 bits (95), Expect(3) = e-121
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 409 RGVETRFIKTAAYGHFGRDDP 347
RG RF+KTAAYGHFGRDDP
Sbjct: 356 RGGNDRFLKTAAYGHFGRDDP 376
>sp|P43280|METK_LYCES S-adenosylmethionine synthetase 1 (Methionine adenosyltransferase
1) (AdoMet synthetase 1) gi|1084406|pir||S46538
methionine adenosyltransferase (EC 2.5.1.6) - tomato
gi|429104|emb|CAA80865.1| S-adenosyl-L-methionine
synthetase [Lycopersicon esculentum]
Length = 393
Score = 389 bits (1000), Expect(3) = e-119
Identities = 186/200 (93%), Positives = 196/200 (98%)
Frame = -2
Query: 995 TCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVI 816
TCAWLRPDGKTQVTVEY N+NGAMVP+RVHTVLISTQHDETV+ND+IA DLKEHVIKPVI
Sbjct: 160 TCAWLRPDGKTQVTVEYSNDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVI 219
Query: 815 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 636
PEKYLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD
Sbjct: 220 PEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 279
Query: 635 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKE 456
RSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVD+YGTG IPD+EIL+IVKE
Sbjct: 280 RSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKE 339
Query: 455 NFDFRPGMMTINLDLKRGGN 396
NFDFRPGMM+INLDLKRGGN
Sbjct: 340 NFDFRPGMMSINLDLKRGGN 359
Score = 43.9 bits (102), Expect(3) = e-119
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 348 PDFTWEVVKPLKWEKPQ 298
PDFTWEVVKPLKWEKPQ
Sbjct: 376 PDFTWEVVKPLKWEKPQ 392
Score = 41.2 bits (95), Expect(3) = e-119
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 409 RGVETRFIKTAAYGHFGRDDP 347
RG RF+KTAAYGHFGRDDP
Sbjct: 356 RGGNRRFLKTAAYGHFGRDDP 376
>sp|Q96551|METK_CATRO S-adenosylmethionine synthetase 1 (Methionine adenosyltransferase
1) (AdoMet synthetase 1) gi|1655576|emb|CAA95856.1|
S-adenosyl-L-methionine synthetase 1 [Catharanthus
roseus]
Length = 393
Score = 394 bits (1013), Expect(3) = e-119
Identities = 189/200 (94%), Positives = 197/200 (98%)
Frame = -2
Query: 995 TCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVI 816
TC WLRPDGKTQVTVEYYNENGAMVPVRVHTV+ISTQHDETV+NDQIAADLKEHVIKPVI
Sbjct: 160 TCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVVISTQHDETVTNDQIAADLKEHVIKPVI 219
Query: 815 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 636
PEKYLDE+TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD
Sbjct: 220 PEKYLDERTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 279
Query: 635 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKE 456
RSGAYIVRQAAKSIVANGLARRC+VQVSYAIGVPEPLSVFVD+YGTG IPDKEIL+IVKE
Sbjct: 280 RSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKE 339
Query: 455 NFDFRPGMMTINLDLKRGGN 396
NFDFRPGM+ INLDLKRGG+
Sbjct: 340 NFDFRPGMIAINLDLKRGGS 359
Score = 40.8 bits (94), Expect(3) = e-119
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 409 RGVETRFIKTAAYGHFGRDDP 347
RG RF+KTAAYGHFGRDDP
Sbjct: 356 RGGSGRFLKTAAYGHFGRDDP 376
Score = 39.3 bits (90), Expect(3) = e-119
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 348 PDFTWEVVKPLKWEK 304
PDFTWEVVKPLKWEK
Sbjct: 376 PDFTWEVVKPLKWEK 390
>gb|AAK71235.1| S-adenosylmethionine synthetase [Brassica juncea]
Length = 393
Score = 390 bits (1001), Expect(3) = e-119
Identities = 186/200 (93%), Positives = 196/200 (98%)
Frame = -2
Query: 995 TCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVI 816
TC WLRPDGKTQVTVEYYN+NGAMVPVRVHTVLISTQHDETV+ND+IA DLKEHVIKP+I
Sbjct: 160 TCRWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPII 219
Query: 815 PEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 636
PEKYLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD
Sbjct: 220 PEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVD 279
Query: 635 RSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKE 456
RSGAYIVRQAAKS+VANG+ARR LVQVSYAIGVPEPLSVFVD+YGTG IPDKEIL+IVKE
Sbjct: 280 RSGAYIVRQAAKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKE 339
Query: 455 NFDFRPGMMTINLDLKRGGN 396
+FDFRPGMMTINLDLKRGGN
Sbjct: 340 SFDFRPGMMTINLDLKRGGN 359
Score = 42.7 bits (99), Expect(3) = e-119
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 348 PDFTWEVVKPLKWEKPQ 298
PDFTWEVVKPLKW+KPQ
Sbjct: 376 PDFTWEVVKPLKWDKPQ 392
Score = 40.8 bits (94), Expect(3) = e-119
Identities = 17/21 (80%), Positives = 18/21 (84%)
Frame = -3
Query: 409 RGVETRFIKTAAYGHFGRDDP 347
RG RF+KTAAYGHFGRDDP
Sbjct: 356 RGGNGRFLKTAAYGHFGRDDP 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 888,721,157
Number of Sequences: 1393205
Number of extensions: 21067906
Number of successful extensions: 68663
Number of sequences better than 10.0: 283
Number of HSP's better than 10.0 without gapping: 59583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67041
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57117888189
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
