Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002048A_C01 KMC002048A_c01
(191 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00020132.1| hypothetical protein [Chloroflexus aurantiacus] 30 9.6
>gb|ZP_00020132.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 214
Score = 30.0 bits (66), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = -2
Query: 184 IWIMNLGFASRLTSEVLEFDCITLTLIVREL 92
+W G SR+T + FD +TLT +V EL
Sbjct: 7 LWYPAKGVGSRITCGYMYFDALTLTAVVEEL 37
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,408,331
Number of Sequences: 1393205
Number of extensions: 2020875
Number of successful extensions: 2748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 448,689,247
effective HSP length: 39
effective length of database: 394,354,252
effective search space used: 9464502048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
